Variant report
| Variant | rs72976261 |
|---|---|
| Chromosome Location | chr6:55383066-55383067 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr6:55377485..55380117-chr6:55381946..55384931,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs11752812 | 1.00[ASN][1000 genomes] |
| rs11753028 | 1.00[ASN][1000 genomes] |
| rs11753553 | 1.00[ASN][1000 genomes] |
| rs11754509 | 1.00[ASN][1000 genomes] |
| rs11756219 | 1.00[ASN][1000 genomes] |
| rs11756598 | 1.00[ASN][1000 genomes] |
| rs11758071 | 1.00[ASN][1000 genomes] |
| rs11759233 | 1.00[ASN][1000 genomes] |
| rs11961322 | 1.00[ASN][1000 genomes] |
| rs13195454 | 1.00[ASN][1000 genomes] |
| rs6923399 | 1.00[ASN][1000 genomes] |
| rs72874012 | 1.00[ASN][1000 genomes] |
| rs72874020 | 1.00[ASN][1000 genomes] |
| rs72874021 | 1.00[ASN][1000 genomes] |
| rs72973115 | 1.00[ASN][1000 genomes] |
| rs72973134 | 1.00[ASN][1000 genomes] |
| rs72973139 | 1.00[ASN][1000 genomes] |
| rs72973142 | 1.00[ASN][1000 genomes] |
| rs72973143 | 1.00[ASN][1000 genomes] |
| rs72975079 | 1.00[ASN][1000 genomes] |
| rs72975085 | 1.00[ASN][1000 genomes] |
| rs72975086 | 1.00[ASN][1000 genomes] |
| rs72975090 | 1.00[ASN][1000 genomes] |
| rs72975095 | 1.00[ASN][1000 genomes] |
| rs72986062 | 1.00[AFR][1000 genomes] |
| rs72988047 | 1.00[ASN][1000 genomes] |
| rs72988067 | 1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1034037 | chr6:55222409-56069600 | Enhancers Strong transcription Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 7 gene(s) | inside rSNPs | diseases |
| 2 | nsv1029436 | chr6:55237283-55386038 | Enhancers Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv1024550 | chr6:55237723-55387481 | Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv948358 | chr6:55351282-55477277 | Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1031992 | chr6:55365469-55391815 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 6 | nsv1026411 | chr6:55372845-55653498 | Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr6:55376400-55399200 | Weak transcription | Breast Myoepithelial Primary Cells | Breast |
| 2 | chr6:55376800-55396400 | Weak transcription | Left Ventricle | heart |
