Variant report

Variant	rs72874705
Chromosome Location	chr4:95343204-95343205
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:95343124..95345020-chr4:95393630..95395328,2	K562	blood:
2	chr4:95341934..95343523-chr4:95372217..95374894,2	MCF-7	breast:
3	chr4:95340337..95343627-chr4:95345618..95349252,4	K562	blood:
4	chr4:95341298..95345302-chr4:95372350..95375741,4	K562	blood:
5	chr4:95341600..95343627-chr4:95346640..95349228,3	K562	blood:

Variant related genes	Relation type
ENSG00000163110	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11097429	1.00[EUR][1000 genomes]
rs11932136	1.00[EUR][1000 genomes]
rs11932224	1.00[EUR][1000 genomes]
rs11933735	1.00[EUR][1000 genomes]
rs11935012	1.00[EUR][1000 genomes]
rs11935039	1.00[EUR][1000 genomes]
rs11935947	1.00[EUR][1000 genomes]
rs11938329	1.00[EUR][1000 genomes]
rs11938449	1.00[EUR][1000 genomes]
rs11939756	1.00[EUR][1000 genomes]
rs11940613	1.00[EUR][1000 genomes]
rs11941259	1.00[EUR][1000 genomes]
rs11941353	1.00[EUR][1000 genomes]
rs11942920	1.00[EUR][1000 genomes]
rs11946663	1.00[EUR][1000 genomes]
rs56827347	1.00[EUR][1000 genomes]
rs58528979	1.00[EUR][1000 genomes]
rs6845473	1.00[EUR][1000 genomes]
rs72874730	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874733	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874739	1.00[EUR][1000 genomes]
rs72874745	1.00[EUR][1000 genomes]
rs72874752	1.00[EUR][1000 genomes]
rs72874760	1.00[EUR][1000 genomes]
rs72874763	1.00[EUR][1000 genomes]
rs72874764	1.00[EUR][1000 genomes]
rs72874769	1.00[EUR][1000 genomes]
rs72874781	1.00[EUR][1000 genomes]
rs72874785	1.00[EUR][1000 genomes]
rs72874786	1.00[EUR][1000 genomes]
rs72874791	1.00[EUR][1000 genomes]
rs72874800	1.00[EUR][1000 genomes]
rs72874802	1.00[EUR][1000 genomes]
rs72876204	1.00[EUR][1000 genomes]
rs72876207	1.00[EUR][1000 genomes]
rs72876211	1.00[EUR][1000 genomes]
rs72876216	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72876217	1.00[EUR][1000 genomes]
rs72876219	1.00[EUR][1000 genomes]
rs72876229	1.00[EUR][1000 genomes]
rs72876241	1.00[EUR][1000 genomes]
rs72890408	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72890416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7673478	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95334400-95346400	Weak transcription	Aorta	Aorta
2	chr4:95340400-95343600	Enhancers	Fetal Intestine Large	intestine
3	chr4:95340400-95344200	Enhancers	HepG2	liver
4	chr4:95342200-95343600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr4:95342400-95343400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:95343200-95343600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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