Variant report

Variant	rs72876241
Chromosome Location	chr4:95422664-95422665
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:95407018..95410385-chr4:95421920..95424793,3	K562	blood:

Variant related genes	Relation type
ENSG00000163110	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs11097429	1.00[EUR][1000 genomes]
rs11932136	1.00[EUR][1000 genomes]
rs11932224	1.00[EUR][1000 genomes]
rs11933735	1.00[EUR][1000 genomes]
rs11935012	1.00[EUR][1000 genomes]
rs11935039	1.00[EUR][1000 genomes]
rs11935947	1.00[EUR][1000 genomes]
rs11938329	1.00[EUR][1000 genomes]
rs11938449	1.00[EUR][1000 genomes]
rs11939756	1.00[EUR][1000 genomes]
rs11940613	1.00[EUR][1000 genomes]
rs11941259	1.00[EUR][1000 genomes]
rs11941353	1.00[EUR][1000 genomes]
rs11942920	1.00[EUR][1000 genomes]
rs11946663	1.00[EUR][1000 genomes]
rs56827347	1.00[EUR][1000 genomes]
rs58528979	1.00[EUR][1000 genomes]
rs6845473	1.00[EUR][1000 genomes]
rs72874705	1.00[EUR][1000 genomes]
rs72874730	1.00[EUR][1000 genomes]
rs72874733	1.00[EUR][1000 genomes]
rs72874739	1.00[EUR][1000 genomes]
rs72874745	1.00[EUR][1000 genomes]
rs72874752	1.00[EUR][1000 genomes]
rs72874760	1.00[EUR][1000 genomes]
rs72874763	1.00[EUR][1000 genomes]
rs72874764	1.00[EUR][1000 genomes]
rs72874769	1.00[EUR][1000 genomes]
rs72874781	1.00[EUR][1000 genomes]
rs72874785	1.00[EUR][1000 genomes]
rs72874786	1.00[EUR][1000 genomes]
rs72874791	1.00[EUR][1000 genomes]
rs72874800	1.00[EUR][1000 genomes]
rs72874802	1.00[EUR][1000 genomes]
rs72876204	1.00[EUR][1000 genomes]
rs72876207	1.00[EUR][1000 genomes]
rs72876211	1.00[EUR][1000 genomes]
rs72876216	1.00[EUR][1000 genomes]
rs72876217	1.00[EUR][1000 genomes]
rs72876219	1.00[EUR][1000 genomes]
rs72876229	1.00[EUR][1000 genomes]
rs72890408	1.00[EUR][1000 genomes]
rs72890416	1.00[EUR][1000 genomes]
rs7673478	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95375000-95440200	Weak transcription	Primary T cells from cord blood	blood
2	chr4:95394400-95428000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr4:95398400-95428400	Weak transcription	Small Intestine	intestine
4	chr4:95400800-95440000	Weak transcription	Lung	lung
5	chr4:95405000-95429000	Weak transcription	Primary hematopoietic stem cells	blood
6	chr4:95407200-95428000	Weak transcription	Placenta	Placenta
7	chr4:95408000-95428000	Weak transcription	K562	blood
8	chr4:95411000-95427800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr4:95412400-95424600	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:95412800-95426000	Weak transcription	Rectal Smooth Muscle	rectum
11	chr4:95412800-95428400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr4:95413000-95426200	Weak transcription	Stomach Smooth Muscle	stomach
13	chr4:95413200-95427400	Weak transcription	A549	lung
14	chr4:95413200-95428000	Weak transcription	Hela-S3	cervix
15	chr4:95413400-95425800	Weak transcription	HSMMtube	muscle
16	chr4:95413400-95428000	Weak transcription	NH-A	brain
17	chr4:95413400-95428400	Weak transcription	NHLF	lung
18	chr4:95413600-95425600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr4:95414600-95429000	Weak transcription	Esophagus	oesophagus
20	chr4:95415400-95425800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr4:95415400-95429000	Weak transcription	Fetal Muscle Leg	muscle
22	chr4:95415400-95440200	Weak transcription	Primary T helper cells fromperipheralblood	blood
23	chr4:95416200-95427400	Weak transcription	Fetal Intestine Large	intestine
24	chr4:95416400-95425600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:95417000-95427200	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr4:95417200-95426800	Weak transcription	HUVEC	blood vessel
27	chr4:95417200-95428000	Weak transcription	Muscle Satellite Cultured Cells	--
28	chr4:95418000-95425800	Weak transcription	Right Ventricle	heart
29	chr4:95418000-95430800	Weak transcription	Pancreas	Pancrea
30	chr4:95419600-95428400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr4:95419800-95427800	Weak transcription	Aorta	Aorta
32	chr4:95419800-95428600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr4:95420000-95422800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr4:95420000-95427600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:95420000-95427600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:95420000-95427800	Weak transcription	HMEC	breast
37	chr4:95420000-95427800	Weak transcription	NHEK	skin
38	chr4:95420000-95428000	Weak transcription	HSMM	muscle
39	chr4:95420200-95427600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
40	chr4:95421000-95425400	Enhancers	Fetal Heart	heart
41	chr4:95421200-95425400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:95421200-95426400	Weak transcription	Fetal Intestine Small	intestine
43	chr4:95421200-95429000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr4:95421200-95429600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr4:95421200-95440000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr4:95421400-95428600	Weak transcription	HUES6 Cell Line	embryonic stem cell
47	chr4:95421400-95431400	Enhancers	Skeletal Muscle Male	skeletal muscle
48	chr4:95421600-95422800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr4:95421600-95440000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
50	chr4:95421800-95423800	Enhancers	Skeletal Muscle Female	skeletal muscle

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