Variant report

Variant	rs72874760
Chromosome Location	chr4:95380614-95380615
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:95378587..95381661-chr4:95382526..95385880,5	K562	blood:
2	chr4:95379639..95382312-chr4:95516678..95518762,3	K562	blood:
3	chr4:95332554..95334436-chr4:95380413..95382035,2	K562	blood:
4	chr4:95380200..95382308-chr4:95382568..95385131,2	MCF-7	breast:
5	chr4:95380389..95383633-chr4:95406287..95409209,3	K562	blood:
6	chr4:95377004..95378631-chr4:95378728..95380869,2	MCF-7	breast:
7	chr4:95380142..95380934-chr4:95393691..95394346,2	MCF-7	breast:

Extended variants
information (count: 49 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs11097429	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11097430	0.83[AMR][1000 genomes]
rs11932136	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11932224	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11933735	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11935012	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11935039	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11935084	0.89[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs11935947	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11938329	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11938449	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11939756	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11940613	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11941259	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11941353	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11942920	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11946663	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs56827347	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs58528979	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6845473	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874705	1.00[EUR][1000 genomes]
rs72874730	1.00[EUR][1000 genomes]
rs72874733	1.00[EUR][1000 genomes]
rs72874739	1.00[EUR][1000 genomes]
rs72874745	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874752	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874763	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874764	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874769	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874781	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874785	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874786	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874791	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874800	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72874802	1.00[EUR][1000 genomes]
rs72876204	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72876207	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72876211	1.00[EUR][1000 genomes]
rs72876216	1.00[EUR][1000 genomes]
rs72876217	1.00[EUR][1000 genomes]
rs72876219	1.00[EUR][1000 genomes]
rs72876229	1.00[EUR][1000 genomes]
rs72876241	1.00[EUR][1000 genomes]
rs72890408	1.00[EUR][1000 genomes]
rs72890416	1.00[EUR][1000 genomes]
rs7673478	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv993495	chr4:94992315-95482578	Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv594901	chr4:95254730-95493246	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1003743	chr4:95255957-95469831	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:95374200-95387000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr4:95374200-95388600	Weak transcription	Gastric	stomach
3	chr4:95374200-95389200	Weak transcription	Lung	lung
4	chr4:95374200-95395400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr4:95374200-95400000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr4:95374400-95382400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr4:95374600-95381000	Weak transcription	Spleen	Spleen
8	chr4:95374600-95382200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
9	chr4:95374600-95388800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr4:95374800-95381600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:95374800-95385200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr4:95374800-95398200	Weak transcription	Esophagus	oesophagus
13	chr4:95375000-95387600	Weak transcription	Fetal Stomach	stomach
14	chr4:95375000-95440200	Weak transcription	Primary T cells from cord blood	blood
15	chr4:95375800-95401600	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr4:95376000-95380800	Weak transcription	Colonic Mucosa	Colon
17	chr4:95376000-95385000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr4:95376600-95381200	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr4:95376600-95392000	Weak transcription	Fetal Muscle Leg	muscle
20	chr4:95377000-95381800	Genic enhancers	HepG2	liver
21	chr4:95377200-95380800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr4:95377200-95382200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr4:95377800-95382600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr4:95378000-95383000	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr4:95378200-95380800	Weak transcription	Left Ventricle	heart
26	chr4:95378200-95383200	Enhancers	HUES6 Cell Line	embryonic stem cell
27	chr4:95378400-95381200	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr4:95378400-95381800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr4:95378400-95382600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr4:95378400-95383600	Enhancers	HUES48 Cell Line	embryonic stem cell
31	chr4:95378600-95380800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr4:95378800-95381000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
33	chr4:95378800-95381000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
34	chr4:95378800-95381200	Enhancers	Brain Angular Gyrus	brain
35	chr4:95378800-95381400	Enhancers	Colon Smooth Muscle	Colon
36	chr4:95378800-95382800	Enhancers	iPS-20b Cell Line	embryonic stem cell
37	chr4:95378800-95383000	Enhancers	H1 Cell Line	embryonic stem cell
38	chr4:95378800-95384200	Enhancers	iPS-18 Cell Line	embryonic stem cell
39	chr4:95378800-95391200	Weak transcription	Placenta	Placenta
40	chr4:95379000-95381000	Enhancers	Stomach Mucosa	stomach
41	chr4:95379000-95382200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr4:95379200-95380800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
43	chr4:95379200-95380800	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr4:95379200-95381000	Weak transcription	Aorta	Aorta
45	chr4:95379200-95381000	Enhancers	Fetal Intestine Large	intestine
46	chr4:95379200-95381000	Weak transcription	Ovary	ovary
47	chr4:95379200-95381200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:95379200-95381200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr4:95379200-95381200	Enhancers	Adipose Nuclei	Adipose
50	chr4:95379200-95381200	Enhancers	Rectal Smooth Muscle	rectum

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