Variant report

Variant	rs72877828
Chromosome Location	chr6:65739821-65739822
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 112 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:90)

rs_ID	r²[population]
rs11752311	1.00[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11756218	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11757845	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs11758005	0.98[ASN][1000 genomes]
rs11758096	1.00[AFR][1000 genomes]
rs11759933	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs12175848	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs17688615	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs17739511	1.00[AFR][1000 genomes]
rs2024834	1.00[AFR][1000 genomes]
rs2144716	1.00[AFR][1000 genomes]
rs2224205	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2224206	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs2224207	0.92[ASN][1000 genomes]
rs2349998	0.83[ASN][1000 genomes]
rs2349999	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs28493571	0.86[ASN][1000 genomes]
rs28546411	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs28583858	0.83[ASN][1000 genomes]
rs28710139	1.00[AFR][1000 genomes]
rs61310776	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs718017	0.83[ASN][1000 genomes]
rs72875929	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72875932	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72875936	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72875953	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72875955	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72875958	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72875962	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72875963	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72875965	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72875967	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72875968	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72875972	0.87[ASN][1000 genomes]
rs72875975	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72875977	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs72875979	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs72877814	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs72877816	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs72877817	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs72877819	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs72877827	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs72877831	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs72877837	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs72877840	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs7738129	0.94[ASN][1000 genomes]
rs7765697	0.83[ASN][1000 genomes]
rs9342454	0.87[ASN][1000 genomes]
rs9345571	1.00[AFR][1000 genomes]
rs9345573	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9345574	1.00[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs9345575	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9345576	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9345578	0.87[ASN][1000 genomes]
rs9345582	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9345583	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9345584	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9345585	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9345591	0.94[ASN][1000 genomes]
rs9351475	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9351477	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9354194	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9354195	1.00[AFR][1000 genomes];0.81[ASN][1000 genomes]
rs9354196	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9354197	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9354199	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9354203	1.00[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9354207	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9354208	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9360100	1.00[AFR][1000 genomes]
rs9360103	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9360105	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9360106	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9360109	1.00[AFR][1000 genomes];0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9360110	0.86[ASN][1000 genomes]
rs9363299	1.00[AFR][1000 genomes]
rs9363301	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9363302	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9363303	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9363304	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9363307	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9363308	0.87[ASN][1000 genomes]
rs9363309	1.00[AFR][1000 genomes];0.87[ASN][1000 genomes]
rs9363310	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9363311	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9363312	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9363313	1.00[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs9363314	1.00[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs9363323	1.00[AFR][1000 genomes];0.98[ASN][1000 genomes]
rs9363325	1.00[AFR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:22 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020411	chr6:65321029-65854790	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv538276	chr6:65321029-65854790	ZNF genes & repeats Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1034253	chr6:65390865-65865124	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv538278	chr6:65390865-65865124	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv949287	chr6:65422320-65828488	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv948458	chr6:65463110-65828488	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv933558	chr6:65524861-65760189	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
8	nsv1034043	chr6:65573463-65823028	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
9	nsv1034230	chr6:65579061-65887750	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
10	nsv933464	chr6:65596504-65767718	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv933937	chr6:65596504-65926900	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
12	nsv933776	chr6:65598694-65760189	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
13	nsv1022556	chr6:65624150-65914258	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	nsv934051	chr6:65625209-65926900	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv934217	chr6:65655722-65767718	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv933140	chr6:65655722-65814323	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
17	nsv886009	chr6:65698500-65918809	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
18	nsv1018829	chr6:65706561-65877545	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
19	nsv1018528	chr6:65706561-65900388	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
20	nsv1022419	chr6:65708779-65760190	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
21	nsv538283	chr6:65708779-65760190	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
22	nsv933059	chr6:65726611-65854649	Enhancers ZNF genes & repeats Weak transcription Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:65731000-65740200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr6:65738800-65743200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:65739800-65740200	Enhancers	Pancreas	Pancrea

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