Variant report

Variant	rs72877942
Chromosome Location	chr6:56122643-56122644
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs57111714	0.83[EUR][1000 genomes]
rs72877923	1.00[AMR][1000 genomes]
rs72877926	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72877930	0.83[EUR][1000 genomes]
rs72877933	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72877936	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72877966	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72877975	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72877976	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72877980	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72877995	0.83[EUR][1000 genomes]
rs72877996	0.83[EUR][1000 genomes]
rs7739025	0.83[EUR][1000 genomes]
rs7744737	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56113400-56123800	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:56117200-56123000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr6:56120600-56123200	Weak transcription	Fetal Lung	lung
4	chr6:56120600-56123800	Weak transcription	Fetal Kidney	kidney
5	chr6:56120800-56122800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr6:56120800-56123000	Weak transcription	Fetal Muscle Leg	muscle
7	chr6:56120800-56123200	Weak transcription	HSMMtube	muscle
8	chr6:56120800-56123600	Weak transcription	Fetal Brain Male	brain
9	chr6:56120800-56129800	Weak transcription	Aorta	Aorta
10	chr6:56122200-56124400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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