Variant report

Variant	rs72877966
Chromosome Location	chr6:56131177-56131178
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs57111714	1.00[EUR][1000 genomes]
rs72866942	0.81[EUR][1000 genomes]
rs72866986	0.81[EUR][1000 genomes]
rs72866990	0.81[EUR][1000 genomes]
rs72866993	0.81[EUR][1000 genomes]
rs72877923	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs72877926	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877930	1.00[EUR][1000 genomes]
rs72877933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877942	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs72877975	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877976	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877980	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72877989	0.91[EUR][1000 genomes]
rs72877995	1.00[EUR][1000 genomes]
rs72877996	1.00[EUR][1000 genomes]
rs72879909	0.81[EUR][1000 genomes]
rs72879912	0.81[EUR][1000 genomes]
rs7739025	1.00[EUR][1000 genomes]
rs7742185	0.81[EUR][1000 genomes]
rs7743024	0.81[EUR][1000 genomes]
rs7744737	1.00[EUR][1000 genomes]
rs7754470	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv885911	chr6:55789704-56143231	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:56130000-56131400	Enhancers	Rectal Smooth Muscle	rectum
2	chr6:56130000-56132000	Weak transcription	Fetal Stomach	stomach
3	chr6:56130000-56132200	Enhancers	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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