Variant report

Variant	rs72882544
Chromosome Location	chr3:45680692-45680693
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13316599	0.83[AMR][1000 genomes]
rs28401433	0.85[AMR][1000 genomes]
rs56404048	0.83[AMR][1000 genomes]
rs57013034	0.83[AMR][1000 genomes]
rs58213273	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61603235	0.85[AMR][1000 genomes]
rs6778381	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6780893	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6786791	0.85[AMR][1000 genomes]
rs73830443	0.83[AMR][1000 genomes]
rs73830458	0.85[AMR][1000 genomes]
rs73830463	0.83[AMR][1000 genomes]
rs9811206	0.85[AMR][1000 genomes]
rs9823820	0.85[AMR][1000 genomes]
rs9827350	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9850601	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34130	chr3:45609075-45796657	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45642200-45705800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr3:45653200-45682000	Weak transcription	Esophagus	oesophagus
3	chr3:45668200-45685400	Weak transcription	Brain Angular Gyrus	brain
4	chr3:45671400-45683800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:45672400-45688800	Weak transcription	Right Atrium	heart
6	chr3:45673000-45685200	Weak transcription	Fetal Kidney	kidney
7	chr3:45673200-45681400	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr3:45673200-45688400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr3:45673600-45685000	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr3:45673600-45688400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
11	chr3:45673800-45685000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
12	chr3:45674000-45681400	Weak transcription	HUVEC	blood vessel
13	chr3:45674000-45691400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
14	chr3:45674400-45682200	Weak transcription	Right Ventricle	heart
15	chr3:45674600-45684200	Weak transcription	Colonic Mucosa	Colon
16	chr3:45675400-45684200	Weak transcription	Psoas Muscle	Psoas
17	chr3:45675600-45681000	Strong transcription	Primary B cells from peripheral blood	blood
18	chr3:45676000-45683800	Strong transcription	Fetal Muscle Leg	muscle
19	chr3:45676400-45684200	Weak transcription	Fetal Brain Female	brain
20	chr3:45676600-45683200	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:45676800-45681000	Strong transcription	Fetal Thymus	thymus
22	chr3:45676800-45685200	Strong transcription	Dnd41	blood
23	chr3:45677000-45684000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:45677000-45686800	Weak transcription	Brain Germinal Matrix	brain
25	chr3:45677400-45681000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
26	chr3:45677400-45684600	Strong transcription	Primary B cells from cord blood	blood
27	chr3:45677800-45681600	Weak transcription	Primary neutrophils fromperipheralblood	blood
28	chr3:45677800-45686200	Weak transcription	Aorta	Aorta
29	chr3:45678000-45681600	Weak transcription	NH-A	brain
30	chr3:45678000-45683800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:45678200-45683000	Weak transcription	NHDF-Ad	bronchial
32	chr3:45678200-45684200	Weak transcription	HSMMtube	muscle
33	chr3:45678200-45685200	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr3:45678400-45681600	Weak transcription	Osteobl	bone
35	chr3:45678400-45681800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
36	chr3:45678400-45681800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr3:45678400-45681800	Strong transcription	Muscle Satellite Cultured Cells	--
38	chr3:45678400-45682000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
39	chr3:45678400-45682200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
40	chr3:45678400-45682200	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr3:45678400-45682200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr3:45678400-45682200	Weak transcription	Fetal Heart	heart
43	chr3:45678400-45682200	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr3:45678400-45682400	Strong transcription	Cortex derived primary cultured neurospheres	brain
45	chr3:45678400-45684200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr3:45678400-45685200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
47	chr3:45678400-45686000	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr3:45678600-45681800	Weak transcription	HSMM	muscle
49	chr3:45678600-45682200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr3:45678600-45685200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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