Variant report

Variant	rs73830463
Chromosome Location	chr3:45834804-45834805
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs13316599	1.00[AMR][1000 genomes]
rs56404048	1.00[AMR][1000 genomes]
rs57013034	1.00[AMR][1000 genomes]
rs58213273	0.83[AMR][1000 genomes]
rs6778381	0.83[AMR][1000 genomes]
rs6780893	0.83[AMR][1000 genomes]
rs72882544	0.83[AMR][1000 genomes]
rs73830443	1.00[AMR][1000 genomes]
rs9827350	0.83[AMR][1000 genomes]
rs9850601	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876734	chr3:45725031-46468467	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
2	nsv498008	chr3:45733423-46319401	Strong transcription Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv834678	chr3:45804294-46010256	Enhancers Flanking Bivalent TSS/Enh Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45826800-45835600	Weak transcription	Duodenum Mucosa	Duodenum
2	chr3:45833000-45842000	Weak transcription	Dnd41	blood
3	chr3:45833800-45835000	Enhancers	Fetal Intestine Large	intestine
4	chr3:45834000-45835000	Genic enhancers	Fetal Intestine Small	intestine
5	chr3:45834600-45837400	Weak transcription	Pancreas	Pancrea
6	chr3:45834800-45835400	Bivalent Enhancer	Primary neutrophils fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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