Variant report

Variant	rs9827350
Chromosome Location	chr3:45707372-45707373
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:45705245..45710892-chr3:45728709..45733346,6	MCF-7	breast:
2	chr3:45634736..45636665-chr3:45706121..45708253,2	MCF-7	breast:
3	chr3:45635035..45636775-chr3:45706580..45709577,3	K562	blood:
4	chr3:45635035..45636713-chr3:45706580..45709568,2	K562	blood:
5	chr3:44769569..44771360-chr3:45705514..45707678,2	K562	blood:

Variant related genes	Relation type
ENSG00000186446	Chromatin interaction
ENSG00000211456	Chromatin interaction
ENSG00000230530	Chromatin interaction
ENSG00000144791	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs13316599	0.83[AMR][1000 genomes]
rs28401433	0.85[AMR][1000 genomes]
rs56404048	0.83[AMR][1000 genomes]
rs57013034	0.83[AMR][1000 genomes]
rs58213273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs61603235	0.85[AMR][1000 genomes]
rs6778381	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6780893	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs6786791	0.85[AMR][1000 genomes]
rs72882544	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73830443	0.83[AMR][1000 genomes]
rs73830458	0.85[AMR][1000 genomes]
rs73830463	0.83[AMR][1000 genomes]
rs9811206	0.85[AMR][1000 genomes]
rs9823820	0.85[AMR][1000 genomes]
rs9850601	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9873753	0.82[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34130	chr3:45609075-45796657	Enhancers Active TSS Strong transcription Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:45689200-45707400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr3:45689600-45707400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr3:45694200-45713800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr3:45697800-45707400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr3:45701600-45707600	Weak transcription	HUES48 Cell Line	embryonic stem cell
6	chr3:45701800-45708200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
7	chr3:45702200-45708000	Weak transcription	Aorta	Aorta
8	chr3:45702200-45714000	Weak transcription	Ovary	ovary
9	chr3:45702800-45710800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr3:45705400-45707600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr3:45705600-45707800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr3:45705600-45708200	Enhancers	Fetal Heart	heart
13	chr3:45705800-45707400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
14	chr3:45705800-45707400	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
15	chr3:45705800-45707400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr3:45705800-45709800	Enhancers	Fetal Brain Female	brain
17	chr3:45705800-45710000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr3:45705800-45710600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr3:45706000-45707400	Genic enhancers	Primary B cells from peripheral blood	blood
20	chr3:45706000-45707400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
21	chr3:45706000-45707600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
22	chr3:45706000-45708200	Weak transcription	HUES64 Cell Line	embryonic stem cell
23	chr3:45706000-45710800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr3:45706200-45707800	Weak transcription	HSMMtube	muscle
25	chr3:45706200-45710200	Enhancers	Fetal Brain Male	brain
26	chr3:45706400-45707400	Enhancers	Pancreas	Pancrea
27	chr3:45706400-45708000	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:45706400-45708400	Enhancers	NH-A	brain
29	chr3:45706400-45712600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
30	chr3:45706600-45707400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr3:45706600-45707400	Weak transcription	Colonic Mucosa	Colon
32	chr3:45706600-45707400	Enhancers	Thymus	Thymus
33	chr3:45706600-45707400	Enhancers	Spleen	Spleen
34	chr3:45706600-45707400	Flanking Active TSS	HUVEC	blood vessel
35	chr3:45706600-45707400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr3:45706600-45707600	Weak transcription	HUES6 Cell Line	embryonic stem cell
37	chr3:45706600-45707600	Weak transcription	HSMM	muscle
38	chr3:45706600-45707800	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr3:45706600-45707800	Weak transcription	Muscle Satellite Cultured Cells	--
40	chr3:45706600-45707800	Weak transcription	Brain Angular Gyrus	brain
41	chr3:45706600-45707800	Enhancers	Left Ventricle	heart
42	chr3:45706600-45708000	Enhancers	Esophagus	oesophagus
43	chr3:45706600-45708400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr3:45706600-45708400	Weak transcription	Duodenum Smooth Muscle	Duodenum
45	chr3:45706600-45708400	Genic enhancers	Fetal Intestine Small	intestine
46	chr3:45706600-45708600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
47	chr3:45706600-45708600	Genic enhancers	NHLF	lung
48	chr3:45706600-45708800	Weak transcription	Placenta Amnion	Placenta Amnion
49	chr3:45706600-45709000	Enhancers	Right Atrium	heart
50	chr3:45706600-45709000	Enhancers	Right Ventricle	heart

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