The 2.0 version of rSNPBase

Variant report

Variant rs72888949
Chromosome Location chr2:63016009-63016010
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:38 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr2:62974200-63017200 Weak transcription Primary T cells from cord blood blood
2 chr2:62982200-63033400 Weak transcription Fetal Intestine Large intestine
3 chr2:63010800-63016600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr2:63010800-63032800 Weak transcription Primary hematopoietic stem cells blood
5 chr2:63011000-63016600 Weak transcription Pancreas Pancrea
6 chr2:63011200-63016600 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
7 chr2:63012000-63018400 Enhancers A549 lung
8 chr2:63012200-63017800 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
9 chr2:63012400-63019400 Enhancers Liver Liver
10 chr2:63013200-63016600 Weak transcription Right Atrium heart
11 chr2:63013400-63016200 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
12 chr2:63013600-63016200 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
13 chr2:63013600-63016800 Weak transcription Fetal Adrenal Gland Adrenal Gland
14 chr2:63013600-63022200 Weak transcription HMEC breast
15 chr2:63014000-63016200 Weak transcription NHDF-Ad bronchial
16 chr2:63014000-63016600 Weak transcription Stomach Smooth Muscle stomach
17 chr2:63014200-63016200 Weak transcription Ovary ovary
18 chr2:63014200-63016200 Enhancers HepG2 liver
19 chr2:63014400-63016400 Weak transcription Cortex derived primary cultured neurospheres brain
20 chr2:63014800-63016600 Weak transcription NHLF lung
21 chr2:63015000-63016200 Weak transcription Brain Inferior Temporal Lobe brain
22 chr2:63015000-63016200 Weak transcription Rectal Smooth Muscle rectum
23 chr2:63015000-63016400 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
24 chr2:63015000-63016400 Weak transcription Adipose Nuclei Adipose
25 chr2:63015000-63016600 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
26 chr2:63015000-63016600 Weak transcription NHEK skin
27 chr2:63015600-63016800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
28 chr2:63015800-63017600 Enhancers Colon Smooth Muscle Colon
29 chr2:63015800-63017600 Enhancers Duodenum Smooth Muscle Duodenum
30 chr2:63016000-63016200 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
31 chr2:63016000-63016200 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
32 chr2:63016000-63017000 Enhancers Foreskin Fibroblast Primary Cells skin02 Skin
33 chr2:63016000-63017400 Enhancers Breast Myoepithelial Primary Cells Breast
34 chr2:63016000-63017400 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
35 chr2:63016000-63017400 Enhancers Brain Dorsolateral Prefrontal Cortex brain
36 chr2:63016000-63017600 Enhancers Pancreatic Islets Pancreatic Islet
37 chr2:63016000-63018000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
38 chr2:63016000-63020000 Enhancers Dnd41 blood

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Last update: Aug 31, 2015