Variant report

Variant	rs72892238
Chromosome Location	chr6:34723136-34723137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34711953..34714210-chr6:34722946..34726652,3	K562	blood:
2	chr6:34663247..34666328-chr6:34722695..34726583,8	K562	blood:
3	chr6:34657778..34659720-chr6:34722705..34725050,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000217130	Chromatin interaction
ENSG00000196821	Chromatin interaction
ENSG00000272288	Chromatin interaction

Extended variants
information (count: 76 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs1018622	0.82[ASN][1000 genomes]
rs11961041	0.94[ASN][1000 genomes]
rs11963234	0.97[ASN][1000 genomes]
rs11967912	0.94[ASN][1000 genomes]
rs11968954	0.94[ASN][1000 genomes]
rs11968972	0.94[ASN][1000 genomes]
rs12111129	0.82[ASN][1000 genomes]
rs13193526	0.80[ASN][1000 genomes]
rs13195490	0.94[ASN][1000 genomes]
rs13196983	0.88[ASN][1000 genomes]
rs13206245	0.94[ASN][1000 genomes]
rs13212699	0.86[ASN][1000 genomes]
rs13213239	0.82[ASN][1000 genomes]
rs16895659	0.82[ASN][1000 genomes]
rs2395603	0.82[ASN][1000 genomes]
rs2395605	0.82[ASN][1000 genomes]
rs28360525	0.82[ASN][1000 genomes]
rs34261333	0.91[ASN][1000 genomes]
rs34377413	0.91[ASN][1000 genomes]
rs34463942	0.84[ASN][1000 genomes]
rs35081279	0.92[ASN][1000 genomes]
rs35103554	0.87[ASN][1000 genomes]
rs35143960	0.94[ASN][1000 genomes]
rs35186650	0.90[ASN][1000 genomes]
rs35195182	0.92[ASN][1000 genomes]
rs35285054	0.80[ASN][1000 genomes]
rs35369977	0.91[ASN][1000 genomes]
rs35444671	0.84[ASN][1000 genomes]
rs35744142	0.94[ASN][1000 genomes]
rs36026951	0.97[ASN][1000 genomes]
rs3734261	0.88[EUR][1000 genomes]
rs4438945	0.91[ASN][1000 genomes]
rs6457792	0.90[ASN][1000 genomes]
rs6457798	0.82[ASN][1000 genomes]
rs66672772	0.94[ASN][1000 genomes]
rs66926909	0.91[ASN][1000 genomes]
rs67622212	0.92[ASN][1000 genomes]
rs67895864	0.92[ASN][1000 genomes]
rs6908462	0.88[ASN][1000 genomes]
rs6909393	0.88[ASN][1000 genomes]
rs6910824	0.82[ASN][1000 genomes]
rs6934741	0.94[ASN][1000 genomes]
rs6941453	0.97[ASN][1000 genomes]
rs71567467	0.82[ASN][1000 genomes]
rs72892286	0.94[ASN][1000 genomes]
rs72910111	0.85[ASN][1000 genomes]
rs72910167	0.88[ASN][1000 genomes]
rs7739385	0.82[ASN][1000 genomes]
rs7743724	0.97[ASN][1000 genomes]
rs7749750	0.88[ASN][1000 genomes]
rs7755354	0.82[ASN][1000 genomes]
rs7758743	0.94[ASN][1000 genomes]
rs7759412	0.88[ASN][1000 genomes]
rs7759985	0.88[ASN][1000 genomes]
rs7763989	0.88[ASN][1000 genomes]
rs7764126	0.82[ASN][1000 genomes]
rs7775947	0.94[ASN][1000 genomes]
rs7776439	0.94[ASN][1000 genomes]
rs912717	0.82[ASN][1000 genomes]
rs9462001	0.82[ASN][1000 genomes]
rs9462002	0.82[ASN][1000 genomes]
rs9462003	0.82[ASN][1000 genomes]
rs9469847	0.81[ASN][1000 genomes]
rs9469852	0.88[ASN][1000 genomes]
rs9968782	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34716200-34724200	Weak transcription	Stomach Mucosa	stomach
2	chr6:34720400-34724200	Weak transcription	Thymus	Thymus
3	chr6:34721000-34723200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr6:34721000-34723600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:34721000-34724200	Weak transcription	Primary hematopoietic stem cells	blood
6	chr6:34721000-34724200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr6:34721000-34724200	Weak transcription	GM12878-XiMat	blood
8	chr6:34721600-34723600	Weak transcription	Primary B cells from peripheral blood	blood
9	chr6:34721800-34724200	Weak transcription	Primary B cells from cord blood	blood
10	chr6:34723000-34724200	Enhancers	Primary monocytes fromperipheralblood	blood

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