Variant report

Variant	rs35081279
Chromosome Location	chr6:34744776-34744777
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:34723819..34725519-chr6:34744326..34746637,2	MCF-7	breast:
2	chr6:34209391..34211783-chr6:34743320..34745322,2	K562	blood:

Variant related genes	Relation type
ENSG00000124562	Chromatin interaction

Extended variants
information (count: 124 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:107)

rs_ID	r²[population]
rs1018622	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1051115	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11961041	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11963234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11966100	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11967912	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11968954	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11968972	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12111129	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13195029	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13195361	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13195490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13196785	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13196983	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13200792	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13205210	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13206245	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13208149	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13210470	0.81[AFR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13212699	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13213239	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13213288	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13213604	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13214596	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs16892384	0.81[ASN][1000 genomes]
rs16892386	0.81[ASN][1000 genomes]
rs16895659	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2296361	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2296362	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2395603	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2395605	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28360525	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34261333	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34355573	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34377413	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs34463942	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs34480956	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34681295	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34840245	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35103554	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35143960	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35186650	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35195182	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35203657	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35286877	0.81[ASN][1000 genomes]
rs35369977	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35444671	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35684630	0.85[ASN][1000 genomes]
rs35744142	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs35940001	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs35987776	0.81[ASN][1000 genomes]
rs36026951	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs3734266	0.83[ASN][1000 genomes]
rs4438945	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4646933	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6457792	0.94[ASN][1000 genomes]
rs6457797	0.85[EUR][1000 genomes]
rs6457798	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs66672772	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs66926909	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs67622212	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs67895864	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6904996	0.89[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6908462	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6909393	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6909637	0.81[ASN][1000 genomes]
rs6910824	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6914031	0.81[EUR][1000 genomes]
rs6914351	0.87[EUR][1000 genomes]
rs6925175	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6926373	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6934741	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6937428	0.81[ASN][1000 genomes]
rs6941453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs71567467	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs72892238	0.92[ASN][1000 genomes]
rs72892286	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs72910111	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72910167	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7739385	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7743724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7743949	0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7749750	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7755354	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7758743	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7759412	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7759985	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7761391	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7763989	0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7764126	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7775947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7776439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs912717	0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9296133	0.82[ASN][1000 genomes]
rs9461994	0.81[ASN][1000 genomes]
rs9461997	0.81[ASN][1000 genomes]
rs9462001	0.89[ASN][1000 genomes]
rs9462002	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9462003	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9469836	0.81[ASN][1000 genomes]
rs9469837	0.81[ASN][1000 genomes]
rs9469840	0.81[ASN][1000 genomes]
rs9469842	0.81[ASN][1000 genomes]
rs9469847	0.88[ASN][1000 genomes]
rs9469852	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9689160	0.80[ASN][1000 genomes]
rs9968782	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
15	nsv1028363	chr6:34733071-34859045	Weak transcription Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
16	nsv885796	chr6:34739726-34823187	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	20 gene(s)	inside rSNPs	diseases
17	nsv1015792	chr6:34741917-34887316	Flanking Active TSS Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs35081279	UHRF1BP1	cis	Muscle Skeletal	GTEx

Chromatin state (count:113 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34726000-34747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr6:34726000-34750000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:34726800-34747800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:34727000-34745200	Strong transcription	Fetal Thymus	thymus
5	chr6:34727200-34746600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
6	chr6:34727400-34745200	Strong transcription	Fetal Intestine Large	intestine
7	chr6:34727800-34744800	Strong transcription	Primary T helper cells fromperipheralblood	blood
8	chr6:34727800-34745200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr6:34728600-34748400	Weak transcription	Fetal Heart	heart
10	chr6:34728800-34745400	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr6:34729600-34745000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr6:34732800-34745000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr6:34732800-34745000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
14	chr6:34733600-34745400	Strong transcription	Duodenum Smooth Muscle	Duodenum
15	chr6:34737000-34744800	Weak transcription	Esophagus	oesophagus
16	chr6:34737000-34744800	Weak transcription	Psoas Muscle	Psoas
17	chr6:34737000-34745000	Weak transcription	Pancreas	Pancrea
18	chr6:34737000-34746800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr6:34737400-34758800	Weak transcription	Colon Smooth Muscle	Colon
20	chr6:34738800-34745600	Strong transcription	Primary T cells from cord blood	blood
21	chr6:34739000-34745200	Weak transcription	Brain Angular Gyrus	brain
22	chr6:34739000-34747600	Weak transcription	Gastric	stomach
23	chr6:34739200-34747400	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr6:34739800-34745800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:34739800-34745800	Weak transcription	Brain Substantia Nigra	brain
26	chr6:34739800-34747000	Weak transcription	A549	lung
27	chr6:34740000-34745000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr6:34740200-34745000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr6:34740600-34745400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:34741200-34749000	Strong transcription	Fetal Intestine Small	intestine
31	chr6:34741200-34749000	Strong transcription	Fetal Stomach	stomach
32	chr6:34741200-34758600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
33	chr6:34741400-34745200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
34	chr6:34741400-34745600	Weak transcription	NHLF	lung
35	chr6:34741400-34759000	Weak transcription	Ovary	ovary
36	chr6:34741600-34747200	Weak transcription	NHDF-Ad	bronchial
37	chr6:34741600-34758800	Weak transcription	Rectal Smooth Muscle	rectum
38	chr6:34741800-34746000	Weak transcription	NHEK	skin
39	chr6:34741800-34747000	Weak transcription	GM12878-XiMat	blood
40	chr6:34742000-34745800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr6:34742000-34746000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
42	chr6:34742000-34758600	Weak transcription	Skeletal Muscle Male	skeletal muscle
43	chr6:34742000-34759000	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr6:34742000-34759000	Weak transcription	Fetal Lung	lung
45	chr6:34742600-34746600	Weak transcription	Lung	lung
46	chr6:34742600-34750400	Weak transcription	Hela-S3	cervix
47	chr6:34742800-34750400	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr6:34742800-34759000	Weak transcription	Left Ventricle	heart
49	chr6:34743000-34746000	Weak transcription	Brain Cingulate Gyrus	brain
50	chr6:34743000-34746800	Weak transcription	H1 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links