Variant report

Variant	rs6934741
Chromosome Location	chr6:34730049-34730050
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:34727618..34732287-chr6:34732833..34737608,8	K562	blood:
2	chr6:34713112..34714744-chr6:34728866..34731406,2	K562	blood:
3	chr6:34671316..34674801-chr6:34727062..34730590,3	K562	blood:
4	chr6:34726193..34732287-chr6:34732320..34736678,10	K562	blood:

Extended variants
information (count: 114 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:100)

rs_ID	r²[population]
rs1018622	0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1051115	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11961041	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11963234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11966100	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11967912	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968954	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11968972	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12111129	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13193526	0.80[ASN][1000 genomes]
rs13195029	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13195361	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13195490	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13196785	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13196983	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13200792	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13205210	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13206245	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13208149	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13210470	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13212699	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13213239	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs13213288	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13213604	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13214596	0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs16895659	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2296361	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2296362	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2395603	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2395605	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28360525	0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34261333	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34355573	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34377413	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34463942	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34480956	0.82[AFR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34681295	0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs34840245	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35081279	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs35103554	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35143960	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35186650	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35195182	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35203657	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35285054	0.80[ASN][1000 genomes]
rs35369977	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35444671	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35684630	0.83[ASN][1000 genomes]
rs35744142	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35940001	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs36026951	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3734261	0.80[ASN][1000 genomes]
rs3734266	0.85[ASN][1000 genomes]
rs4438945	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4646933	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6457792	0.95[ASN][1000 genomes]
rs6457797	0.85[EUR][1000 genomes]
rs6457798	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs66672772	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs66926909	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs67622212	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs67895864	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6904996	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6908462	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6909393	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6910824	0.84[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6914031	0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6914351	0.87[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6925175	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6926373	0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6941453	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs71567467	0.83[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs72892238	0.94[ASN][1000 genomes]
rs72892286	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910111	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs72910167	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7739385	0.89[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7743724	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7743949	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7749750	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7755354	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7758743	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7759412	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7759985	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7761391	0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7763989	0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7764126	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7775947	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7776439	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs912717	0.85[AFR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9296133	0.84[ASN][1000 genomes]
rs9462001	0.88[ASN][1000 genomes]
rs9462002	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9462003	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9462027	0.81[ASN][1000 genomes]
rs9469847	0.86[ASN][1000 genomes]
rs9469852	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9469904	0.81[ASN][1000 genomes]
rs9689160	0.82[ASN][1000 genomes]
rs9968782	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:14 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022844	chr6:34317219-35060519	Weak transcription Genic enhancers Enhancers Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv538195	chr6:34317219-35060519	Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
3	nsv885785	chr6:34404636-34874002	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
4	nsv1033583	chr6:34471572-34828372	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
5	nsv885793	chr6:34520267-34886436	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
6	nsv1032557	chr6:34565802-34802008	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv538196	chr6:34565802-34802008	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
8	esv2763967	chr6:34566255-34925463	Weak transcription Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
9	nsv1020710	chr6:34607214-34890143	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
10	nsv885795	chr6:34704613-34823187	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	24 gene(s)	inside rSNPs	diseases
11	nsv870010	chr6:34713359-34880048	Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv1025374	chr6:34723723-34887316	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv462905	chr6:34728253-34886436	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases
14	nsv602906	chr6:34728253-34886436	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region miRNA target site	30 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs6934741	UHRF1BP1	cis	Muscle Skeletal	GTEx

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:34726000-34730400	Weak transcription	Psoas Muscle	Psoas
2	chr6:34726000-34731000	Weak transcription	Gastric	stomach
3	chr6:34726000-34747800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr6:34726000-34750000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr6:34726200-34730200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr6:34726200-34730200	Weak transcription	Brain Anterior Caudate	brain
7	chr6:34726200-34730400	Weak transcription	Primary neutrophils fromperipheralblood	blood
8	chr6:34726200-34730400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr6:34726200-34730400	Weak transcription	Rectal Mucosa Donor 31	rectum
10	chr6:34726200-34730400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:34726200-34730400	Weak transcription	NHDF-Ad	bronchial
12	chr6:34726200-34732600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
13	chr6:34726200-34732800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr6:34726200-34732800	Weak transcription	NH-A	brain
15	chr6:34726200-34733400	Weak transcription	Left Ventricle	heart
16	chr6:34726200-34734200	Weak transcription	Esophagus	oesophagus
17	chr6:34726200-34734400	Weak transcription	Brain Angular Gyrus	brain
18	chr6:34726200-34734400	Weak transcription	Colonic Mucosa	Colon
19	chr6:34726200-34736200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:34726200-34738000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr6:34726200-34739600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr6:34726400-34730400	Weak transcription	Brain Hippocampus Middle	brain
23	chr6:34726400-34730400	Weak transcription	Brain Substantia Nigra	brain
24	chr6:34726400-34730400	Weak transcription	Small Intestine	intestine
25	chr6:34726400-34730400	Weak transcription	HSMM	muscle
26	chr6:34726400-34730600	Weak transcription	HMEC	breast
27	chr6:34726400-34731800	Weak transcription	Spleen	Spleen
28	chr6:34726400-34739200	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr6:34726400-34739800	Weak transcription	Stomach Mucosa	stomach
30	chr6:34726600-34730200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr6:34726600-34730400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
32	chr6:34726800-34747800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr6:34727000-34731200	Strong transcription	Osteobl	bone
34	chr6:34727000-34731400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr6:34727000-34731600	Strong transcription	HUES6 Cell Line	embryonic stem cell
36	chr6:34727000-34739200	Strong transcription	Fetal Stomach	stomach
37	chr6:34727000-34740200	Strong transcription	Fetal Muscle Leg	muscle
38	chr6:34727000-34743400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
39	chr6:34727000-34743800	Strong transcription	Rectal Mucosa Donor 29	rectum
40	chr6:34727000-34744000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr6:34727000-34744200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr6:34727000-34745200	Strong transcription	Fetal Thymus	thymus
43	chr6:34727200-34730200	Weak transcription	Hela-S3	cervix
44	chr6:34727200-34731400	Strong transcription	HUES48 Cell Line	embryonic stem cell
45	chr6:34727200-34734200	Weak transcription	Right Ventricle	heart
46	chr6:34727200-34735000	Weak transcription	Pancreas	Pancrea
47	chr6:34727200-34735600	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr6:34727200-34739600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr6:34727200-34743800	Strong transcription	HUES64 Cell Line	embryonic stem cell
50	chr6:34727200-34743800	Strong transcription	Skeletal Muscle Female	skeletal muscle

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