Variant report

Variant	rs72892435
Chromosome Location	chr2:186290193-186290194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs11892010	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17331724	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17331826	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17331840	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17403729	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55844738	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56005149	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs56009988	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56223247	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72892459	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892481	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892484	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892495	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894414	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894415	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894417	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894421	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894440	0.92[EUR][1000 genomes]
rs72894442	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894469	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894475	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894477	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894479	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894484	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894488	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72894490	1.00[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896412	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896420	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896423	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs72896483	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896492	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72896501	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898409	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898415	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898424	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898425	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72898429	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72898431	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72904230	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904234	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72904248	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906135	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906138	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906162	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906168	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72906183	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72906189	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72908823	0.92[EUR][1000 genomes]
rs72908826	0.89[EUR][1000 genomes]
rs72910209	0.89[EUR][1000 genomes]
rs72910236	0.82[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs72910242	0.81[EUR][1000 genomes]
rs72910248	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584009	chr2:186203397-186345148	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv459982	chr2:186213755-186475590	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv584012	chr2:186213755-186475590	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv875525	chr2:186223503-186434458	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv470502	chr2:186245653-186309738	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv459983	chr2:186245653-186377253	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv584013	chr2:186245653-186377253	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv524452	chr2:186258409-186297074	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv518379	chr2:186259653-186297074	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
10	nsv875526	chr2:186272059-186434458	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv875527	chr2:186272059-186475590	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:186289600-186290200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr2:186289600-186290200	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr2:186289600-186290200	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:186289600-186290200	Active TSS	Adipose Nuclei	Adipose
5	chr2:186289600-186290600	Active TSS	HUES64 Cell Line	embryonic stem cell
6	chr2:186289600-186291200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr2:186289600-186291600	Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr2:186289600-186291800	Active TSS	ES-I3 Cell Line	embryonic stem cell
9	chr2:186289600-186291800	Active TSS	H1 Cell Line	embryonic stem cell
10	chr2:186289600-186291800	Active TSS	H9 Cell Line	embryonic stem cell
11	chr2:186289600-186291800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr2:186289600-186291800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr2:186289600-186291800	Active TSS	iPS-18 Cell Line	embryonic stem cell
14	chr2:186289600-186292000	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr2:186289600-186292000	Active TSS	HUES6 Cell Line	embryonic stem cell
16	chr2:186289600-186292000	Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr2:186289600-186292200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr2:186289800-186290200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr2:186289800-186290200	Active TSS	Fetal Muscle Trunk	muscle
20	chr2:186289800-186290200	Active TSS	Placenta	Placenta
21	chr2:186289800-186290600	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr2:186289800-186291000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
23	chr2:186289800-186291400	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr2:186289800-186292400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr2:186290000-186290600	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr2:186290000-186291200	Active TSS	Muscle Satellite Cultured Cells	--

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