Variant report

Variant	rs72908823
Chromosome Location	chr2:186261039-186261040
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 60 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11892010	0.84[EUR][1000 genomes]
rs17331724	0.92[EUR][1000 genomes]
rs17331826	0.80[EUR][1000 genomes]
rs17331840	0.80[EUR][1000 genomes]
rs17403729	0.80[EUR][1000 genomes]
rs55844738	0.81[EUR][1000 genomes]
rs56005149	0.80[EUR][1000 genomes]
rs56009988	0.84[EUR][1000 genomes]
rs56223247	0.80[EUR][1000 genomes]
rs72892435	0.92[EUR][1000 genomes]
rs72892459	0.92[EUR][1000 genomes]
rs72892481	0.92[EUR][1000 genomes]
rs72892484	0.84[EUR][1000 genomes]
rs72892495	0.84[EUR][1000 genomes]
rs72894414	0.84[EUR][1000 genomes]
rs72894415	0.84[EUR][1000 genomes]
rs72894417	0.84[EUR][1000 genomes]
rs72894421	0.84[EUR][1000 genomes]
rs72894440	0.84[EUR][1000 genomes]
rs72894442	0.84[EUR][1000 genomes]
rs72894469	0.84[EUR][1000 genomes]
rs72894475	0.84[EUR][1000 genomes]
rs72894477	0.84[EUR][1000 genomes]
rs72894479	0.84[EUR][1000 genomes]
rs72894484	0.84[EUR][1000 genomes]
rs72894488	0.84[EUR][1000 genomes]
rs72894490	0.84[EUR][1000 genomes]
rs72896412	0.80[EUR][1000 genomes]
rs72896420	0.80[EUR][1000 genomes]
rs72896423	0.80[EUR][1000 genomes]
rs72896483	0.80[EUR][1000 genomes]
rs72896492	0.80[EUR][1000 genomes]
rs72896501	0.80[EUR][1000 genomes]
rs72898409	0.80[EUR][1000 genomes]
rs72898412	0.84[EUR][1000 genomes]
rs72898415	0.80[EUR][1000 genomes]
rs72898424	0.80[EUR][1000 genomes]
rs72898425	0.80[EUR][1000 genomes]
rs72898429	0.80[EUR][1000 genomes]
rs72898431	0.80[EUR][1000 genomes]
rs72904230	0.80[EUR][1000 genomes]
rs72904234	0.80[EUR][1000 genomes]
rs72904248	0.80[EUR][1000 genomes]
rs72906135	0.80[EUR][1000 genomes]
rs72906138	0.80[EUR][1000 genomes]
rs72906162	0.80[EUR][1000 genomes]
rs72906168	0.80[EUR][1000 genomes]
rs72906183	0.80[EUR][1000 genomes]
rs72906189	0.80[EUR][1000 genomes]
rs72908826	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910209	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv584009	chr2:186203397-186345148	Active TSS Genic enhancers Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv459982	chr2:186213755-186475590	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv584012	chr2:186213755-186475590	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv875525	chr2:186223503-186434458	Strong transcription Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv470502	chr2:186245653-186309738	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv459983	chr2:186245653-186377253	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv584013	chr2:186245653-186377253	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv524452	chr2:186258409-186297074	Flanking Active TSS Active TSS Weak transcription Enhancers ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
9	nsv518379	chr2:186259653-186297074	Active TSS Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:186259800-186261200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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