Variant report

Variant	rs72906189
Chromosome Location	chr2:186467077-186467078
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 93 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:69)

rs_ID	r²[population]
rs11892010	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs1468954	1.00[AMR][1000 genomes]
rs1468955	1.00[AMR][1000 genomes]
rs17331724	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs17331826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17331840	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17403729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17813104	1.00[AMR][1000 genomes]
rs55844738	0.92[EUR][1000 genomes]
rs56005149	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56009988	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56019528	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56138606	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs56223247	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72892005	0.91[AMR][1000 genomes]
rs72892067	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72892080	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72892435	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72892459	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72892481	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs72892484	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72892495	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72894179	1.00[AMR][1000 genomes]
rs72894197	1.00[AMR][1000 genomes]
rs72894414	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72894415	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72894417	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72894421	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72894440	0.96[EUR][1000 genomes]
rs72894442	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72894469	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72894475	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72894477	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72894479	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72894484	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72894488	0.96[EUR][1000 genomes]
rs72894490	0.96[EUR][1000 genomes]
rs72896016	1.00[AMR][1000 genomes]
rs72896081	1.00[AMR][1000 genomes]
rs72896083	1.00[AMR][1000 genomes]
rs72896412	1.00[EUR][1000 genomes]
rs72896420	1.00[EUR][1000 genomes]
rs72896423	1.00[EUR][1000 genomes]
rs72896483	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896492	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72896501	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898097	0.81[AMR][1000 genomes]
rs72898409	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898412	0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72898415	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898425	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898429	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72898431	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72901994	0.91[AMR][1000 genomes]
rs72904230	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72904234	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72904248	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72906135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72906138	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72906162	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72906168	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72906183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72908823	0.80[EUR][1000 genomes]
rs72910209	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72910236	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72910242	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72910248	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72910273	0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459982	chr2:186213755-186475590	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv584012	chr2:186213755-186475590	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv875527	chr2:186272059-186475590	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv875528	chr2:186301351-186475590	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv1004048	chr2:186303297-186541503	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	nsv875530	chr2:186303530-186475590	ZNF genes & repeats Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv875531	chr2:186303530-186489537	Strong transcription Enhancers ZNF genes & repeats Weak transcription Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
8	nsv875534	chr2:186309738-186475590	Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
9	nsv875536	chr2:186309738-186504175	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv875539	chr2:186345148-186475590	Enhancers Weak transcription ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv875540	chr2:186345148-186583961	Enhancers ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv875541	chr2:186345148-186598526	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
13	nsv1006219	chr2:186352780-186524793	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
14	nsv584017	chr2:186352959-186515328	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
15	nsv584018	chr2:186352959-186598526	Weak transcription Enhancers ZNF genes & repeats Active TSS Strong transcription Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
16	nsv916442	chr2:186356363-186534152	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
17	nsv875543	chr2:186365918-186489537	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
18	nsv1000814	chr2:186391490-186520872	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
19	nsv1007052	chr2:186441382-186864390	Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
20	nsv584019	chr2:186445393-186866874	ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
21	nsv1000561	chr2:186450293-186556017	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
22	nsv1009118	chr2:186450293-186864390	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
23	nsv1004422	chr2:186463915-186556017	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
24	esv3424940	chr2:186464098-186469371	ZNF genes & repeats Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:186450000-186467200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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