Variant report

Variant	rs72899940
Chromosome Location	chr2:67753076-67753077
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs6546295	1.00[EUR][1000 genomes]
rs6546305	1.00[EUR][1000 genomes]
rs6710320	1.00[EUR][1000 genomes]
rs6730868	1.00[EUR][1000 genomes]
rs6736634	1.00[EUR][1000 genomes]
rs6736949	1.00[EUR][1000 genomes]
rs72893073	1.00[EUR][1000 genomes]
rs72897783	1.00[EUR][1000 genomes]
rs72901900	1.00[EUR][1000 genomes]
rs7588812	1.00[EUR][1000 genomes]
rs7599464	1.00[EUR][1000 genomes]
rs7606755	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
2	esv3335541	chr2:67577544-67773907	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67750200-67753800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
2	chr2:67750400-67754400	Enhancers	Hela-S3	cervix
3	chr2:67750400-67755600	Weak transcription	Pancreas	Pancrea
4	chr2:67751200-67753600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr2:67751800-67753200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr2:67751800-67755600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr2:67752000-67753200	Weak transcription	Fetal Lung	lung
8	chr2:67752000-67755400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr2:67752800-67753800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr2:67753000-67754000	Enhancers	Muscle Satellite Cultured Cells	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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