Variant report

Variant	rs6710320
Chromosome Location	chr2:67566634-67566635
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs57865584	1.00[EUR][1000 genomes]
rs6546295	1.00[EUR][1000 genomes]
rs6546305	1.00[EUR][1000 genomes]
rs6710099	0.85[AFR][1000 genomes]
rs6719346	1.00[EUR][1000 genomes]
rs6730868	1.00[EUR][1000 genomes]
rs6736634	1.00[EUR][1000 genomes]
rs6736949	1.00[EUR][1000 genomes]
rs6758968	1.00[AFR][1000 genomes]
rs72897783	1.00[EUR][1000 genomes]
rs72899940	1.00[EUR][1000 genomes]
rs73936705	1.00[EUR][1000 genomes]
rs7580904	1.00[EUR][1000 genomes]
rs7588812	1.00[EUR][1000 genomes]
rs7599464	1.00[EUR][1000 genomes]
rs7606755	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv834249	chr2:67515471-67691605	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67563800-67567000	Strong transcription	H1 Cell Line	embryonic stem cell
2	chr2:67563800-67567000	Strong transcription	HUES48 Cell Line	embryonic stem cell
3	chr2:67563800-67576800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr2:67564800-67567000	Strong transcription	iPS-18 Cell Line	embryonic stem cell
5	chr2:67565000-67567200	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr2:67565200-67567200	Strong transcription	HUES64 Cell Line	embryonic stem cell
7	chr2:67565600-67567600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
8	chr2:67566000-67568800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr2:67566200-67567600	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr2:67566200-67567600	Weak transcription	Right Atrium	heart
11	chr2:67566400-67568400	Enhancers	Fetal Heart	heart
12	chr2:67566400-67568600	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr2:67566400-67576400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr2:67566400-67576800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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