Variant report

Variant	rs57865584
Chromosome Location	chr2:67543723-67543724
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs55678374	1.00[EUR][1000 genomes]
rs6546295	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6546305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6710320	1.00[EUR][1000 genomes]
rs6719346	1.00[EUR][1000 genomes]
rs6730868	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6736634	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6736949	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72897783	1.00[EUR][1000 genomes]
rs73936705	1.00[EUR][1000 genomes]
rs73937659	1.00[EUR][1000 genomes]
rs7580904	1.00[EUR][1000 genomes]
rs7588812	1.00[EUR][1000 genomes]
rs7599464	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7606755	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
4	nsv834249	chr2:67515471-67691605	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67538800-67544600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr2:67539000-67551400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr2:67539200-67544400	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:67539200-67551800	Weak transcription	Fetal Kidney	kidney
5	chr2:67539400-67549000	Weak transcription	Stomach Smooth Muscle	stomach
6	chr2:67541600-67546000	Weak transcription	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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