Variant report

Variant	rs6719346
Chromosome Location	chr2:67465066-67465067
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:67464250..67465118-chr2:67877852..67878567,2	MCF-7	breast:
2	chr2:67464314..67465913-chr2:67549538..67550435,4	MCF-7	breast:
3	chr2:67464167..67465140-chr2:68067336..68068083,4	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs11885815	1.00[EUR][1000 genomes]
rs55678374	1.00[EUR][1000 genomes]
rs55821926	1.00[EUR][1000 genomes]
rs56218347	1.00[EUR][1000 genomes]
rs57865584	1.00[EUR][1000 genomes]
rs58577631	1.00[EUR][1000 genomes]
rs59351975	1.00[EUR][1000 genomes]
rs6546295	1.00[EUR][1000 genomes]
rs6546305	1.00[EUR][1000 genomes]
rs6710320	1.00[EUR][1000 genomes]
rs6730868	1.00[EUR][1000 genomes]
rs6736634	1.00[EUR][1000 genomes]
rs6736949	1.00[EUR][1000 genomes]
rs73936705	1.00[EUR][1000 genomes]
rs73937631	1.00[EUR][1000 genomes]
rs73937634	1.00[EUR][1000 genomes]
rs73937635	1.00[EUR][1000 genomes]
rs73937640	1.00[EUR][1000 genomes]
rs73937645	1.00[EUR][1000 genomes]
rs73937659	1.00[EUR][1000 genomes]
rs7580904	1.00[EUR][1000 genomes]
rs7599464	1.00[EUR][1000 genomes]
rs7603941	1.00[EUR][1000 genomes]
rs7606755	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2759058	chr2:67266707-67465662	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757805	chr2:67287279-67465662	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv428397	chr2:67287279-67465662	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv534389	chr2:67388428-68225338	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
7	nsv1008421	chr2:67417384-67476219	Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	n/a
8	nsv1001672	chr2:67429146-67498042	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv525580	chr2:67464147-67465753	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
10	nsv525890	chr2:67464147-67465753	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67462200-67467600	Weak transcription	Hela-S3	cervix
2	chr2:67463600-67467600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung

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