Variant report

Variant	rs55821926
Chromosome Location	chr2:67287238-67287239
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11885815	1.00[EUR][1000 genomes]
rs11886159	1.00[EUR][1000 genomes]
rs11894836	1.00[EUR][1000 genomes]
rs11900235	1.00[EUR][1000 genomes]
rs17005313	1.00[EUR][1000 genomes]
rs17032836	1.00[EUR][1000 genomes]
rs17032856	1.00[EUR][1000 genomes]
rs17032905	1.00[EUR][1000 genomes]
rs55678374	1.00[EUR][1000 genomes]
rs56027718	1.00[EUR][1000 genomes]
rs56218347	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56283460	1.00[EUR][1000 genomes]
rs58446190	1.00[EUR][1000 genomes]
rs58577631	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59351975	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59368854	1.00[EUR][1000 genomes]
rs60640373	1.00[EUR][1000 genomes]
rs6719346	1.00[EUR][1000 genomes]
rs72904831	1.00[EUR][1000 genomes]
rs72904834	1.00[EUR][1000 genomes]
rs72904837	1.00[EUR][1000 genomes]
rs72904865	1.00[EUR][1000 genomes]
rs72904883	1.00[EUR][1000 genomes]
rs73936705	1.00[EUR][1000 genomes]
rs73937613	1.00[EUR][1000 genomes]
rs73937625	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73937626	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73937631	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73937634	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73937635	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73937640	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73937645	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73937659	1.00[EUR][1000 genomes]
rs7603941	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2756926	chr2:67266707-67337017	Enhancers Bivalent Enhancer ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	esv2759058	chr2:67266707-67465662	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	esv34381	chr2:67273120-67316250	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67283600-67292200	Weak transcription	Colon Smooth Muscle	Colon
2	chr2:67285000-67290000	Weak transcription	Pancreas	Pancrea
3	chr2:67287200-67287400	ZNF genes & repeats	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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