Variant report
| Variant | rs59368854 |
|---|---|
| Chromosome Location | chr2:67244146-67244147 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11885815 | 1.00[EUR][1000 genomes] |
| rs11886159 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11894836 | 1.00[EUR][1000 genomes] |
| rs11900235 | 1.00[EUR][1000 genomes] |
| rs17005313 | 1.00[EUR][1000 genomes] |
| rs17032836 | 1.00[EUR][1000 genomes] |
| rs17032856 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs17032905 | 1.00[EUR][1000 genomes] |
| rs55678374 | 1.00[EUR][1000 genomes] |
| rs55821926 | 1.00[EUR][1000 genomes] |
| rs56027718 | 1.00[EUR][1000 genomes] |
| rs56218347 | 1.00[EUR][1000 genomes] |
| rs56283460 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs58446190 | 1.00[EUR][1000 genomes] |
| rs58577631 | 1.00[EUR][1000 genomes] |
| rs59351975 | 1.00[EUR][1000 genomes] |
| rs60640373 | 1.00[EUR][1000 genomes] |
| rs72904831 | 1.00[EUR][1000 genomes] |
| rs72904834 | 1.00[EUR][1000 genomes] |
| rs72904837 | 1.00[EUR][1000 genomes] |
| rs72904865 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72904883 | 1.00[EUR][1000 genomes] |
| rs73936705 | 1.00[EUR][1000 genomes] |
| rs73937613 | 1.00[EUR][1000 genomes] |
| rs73937625 | 1.00[EUR][1000 genomes] |
| rs73937626 | 1.00[EUR][1000 genomes] |
| rs73937631 | 1.00[EUR][1000 genomes] |
| rs73937634 | 1.00[EUR][1000 genomes] |
| rs73937635 | 1.00[EUR][1000 genomes] |
| rs73937640 | 1.00[EUR][1000 genomes] |
| rs73937645 | 1.00[EUR][1000 genomes] |
| rs73937659 | 1.00[EUR][1000 genomes] |
| rs7603941 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1008584 | chr2:67168244-67703601 | Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 2 | nsv535775 | chr2:67168244-67703601 | Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr2:67243200-67245200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin03 | Skin |
| 2 | chr2:67243200-67245200 | Weak transcription | NHEK | skin |
| 3 | chr2:67243400-67245200 | Weak transcription | Foreskin Keratinocyte Primary Cells skin02 | Skin |
