Variant report

Variant	rs17032836
Chromosome Location	chr2:67215098-67215099
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11885815	1.00[EUR][1000 genomes]
rs11886159	1.00[EUR][1000 genomes]
rs11894836	1.00[EUR][1000 genomes]
rs11900235	1.00[EUR][1000 genomes]
rs11902384	1.00[AMR][1000 genomes]
rs17005313	1.00[EUR][1000 genomes]
rs17032856	1.00[EUR][1000 genomes]
rs17032905	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55678374	1.00[EUR][1000 genomes]
rs55821926	1.00[EUR][1000 genomes]
rs56027718	1.00[EUR][1000 genomes]
rs56218347	1.00[EUR][1000 genomes]
rs56283460	1.00[EUR][1000 genomes]
rs58446190	1.00[EUR][1000 genomes]
rs58577631	1.00[EUR][1000 genomes]
rs59351975	1.00[EUR][1000 genomes]
rs59368854	1.00[EUR][1000 genomes]
rs60640373	1.00[EUR][1000 genomes]
rs72904831	1.00[EUR][1000 genomes]
rs72904834	1.00[EUR][1000 genomes]
rs72904837	1.00[EUR][1000 genomes]
rs72904865	1.00[EUR][1000 genomes]
rs72904883	1.00[EUR][1000 genomes]
rs73936705	1.00[EUR][1000 genomes]
rs73937613	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73937625	1.00[EUR][1000 genomes]
rs73937626	1.00[EUR][1000 genomes]
rs73937631	1.00[EUR][1000 genomes]
rs73937634	1.00[EUR][1000 genomes]
rs73937635	1.00[EUR][1000 genomes]
rs73937640	1.00[EUR][1000 genomes]
rs73937645	1.00[EUR][1000 genomes]
rs73937659	1.00[EUR][1000 genomes]
rs7603941	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv458119	chr2:67204642-67240028	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv582173	chr2:67204642-67240028	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs17032836	SYNE2	trans	lymphoblastoid	seeQTL
rs17032836	ABCA6	trans	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67212200-67215400	Enhancers	Fetal Lung	lung
2	chr2:67213200-67221400	Weak transcription	Rectal Smooth Muscle	rectum
3	chr2:67213400-67221600	Weak transcription	Colon Smooth Muscle	Colon
4	chr2:67214600-67215200	Enhancers	Fetal Heart	heart

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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