Variant report

Variant	rs73937659
Chromosome Location	chr2:67357591-67357592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs11885815	1.00[EUR][1000 genomes]
rs11886159	1.00[EUR][1000 genomes]
rs11894836	1.00[EUR][1000 genomes]
rs11900235	1.00[EUR][1000 genomes]
rs17005313	1.00[EUR][1000 genomes]
rs17032836	1.00[EUR][1000 genomes]
rs17032856	1.00[EUR][1000 genomes]
rs17032905	1.00[EUR][1000 genomes]
rs55678374	1.00[EUR][1000 genomes]
rs55821926	1.00[EUR][1000 genomes]
rs56027718	1.00[EUR][1000 genomes]
rs56218347	1.00[EUR][1000 genomes]
rs56283460	1.00[EUR][1000 genomes]
rs57865584	1.00[EUR][1000 genomes]
rs58446190	1.00[EUR][1000 genomes]
rs58577631	1.00[EUR][1000 genomes]
rs59351975	1.00[EUR][1000 genomes]
rs59368854	1.00[EUR][1000 genomes]
rs60640373	1.00[EUR][1000 genomes]
rs6719346	1.00[EUR][1000 genomes]
rs72904831	1.00[EUR][1000 genomes]
rs72904834	1.00[EUR][1000 genomes]
rs72904837	1.00[EUR][1000 genomes]
rs72904865	1.00[EUR][1000 genomes]
rs72904883	1.00[EUR][1000 genomes]
rs73936705	1.00[EUR][1000 genomes]
rs73937609	1.00[AMR][1000 genomes]
rs73937613	1.00[EUR][1000 genomes]
rs73937625	1.00[EUR][1000 genomes]
rs73937626	1.00[EUR][1000 genomes]
rs73937631	1.00[EUR][1000 genomes]
rs73937634	1.00[EUR][1000 genomes]
rs73937635	1.00[EUR][1000 genomes]
rs73937640	1.00[EUR][1000 genomes]
rs73937645	1.00[EUR][1000 genomes]
rs7580904	1.00[EUR][1000 genomes]
rs7603941	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	esv2759058	chr2:67266707-67465662	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv2757805	chr2:67287279-67465662	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
5	nsv428397	chr2:67287279-67465662	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	esv2762260	chr2:67348997-67361958	Enhancers Weak transcription Bivalent Enhancer	lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67355400-67358600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
2	chr2:67356800-67358800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:67357000-67358400	Enhancers	Fetal Kidney	kidney
4	chr2:67357000-67358600	Enhancers	Fetal Stomach	stomach
5	chr2:67357200-67357600	Enhancers	NHLF	lung
6	chr2:67357200-67358600	Enhancers	Fetal Lung	lung
7	chr2:67357200-67358600	Enhancers	Hela-S3	cervix
8	chr2:67357400-67357600	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr2:67357400-67358600	Enhancers	HUVEC	blood vessel
10	chr2:67357400-67358600	Enhancers	NH-A	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links