Variant report

Variant	rs73937609
Chromosome Location	chr2:67233862-67233863
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11892702	1.00[AMR][1000 genomes]
rs17032630	1.00[AMR][1000 genomes]
rs17032645	1.00[AMR][1000 genomes]
rs17032655	1.00[AMR][1000 genomes]
rs73935992	1.00[AMR][1000 genomes]
rs73937659	1.00[AMR][1000 genomes]
rs7588930	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1008584	chr2:67168244-67703601	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535775	chr2:67168244-67703601	Strong transcription Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv458119	chr2:67204642-67240028	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv582173	chr2:67204642-67240028	Enhancers Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67223800-67234600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr2:67232800-67234000	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr2:67232800-67234000	Enhancers	Fetal Lung	lung
4	chr2:67233200-67234600	Weak transcription	Fetal Stomach	stomach
5	chr2:67233400-67234000	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr2:67233400-67234000	Enhancers	Brain Germinal Matrix	brain
7	chr2:67233600-67234000	Enhancers	HUES48 Cell Line	embryonic stem cell
8	chr2:67233600-67234000	Enhancers	Brain Cingulate Gyrus	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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