Variant report

Variant	rs17032655
Chromosome Location	chr2:67091119-67091120
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:67090168..67092771-chr2:67095579..67098311,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11892702	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1420359	1.00[CHB][hapmap]
rs1420360	1.00[CHB][hapmap]
rs17032622	1.00[JPT][hapmap]
rs17032630	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17032637	0.92[AFR][1000 genomes]
rs17032640	0.92[ASN][1000 genomes]
rs17032645	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs73935992	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73937609	1.00[AMR][1000 genomes]
rs7588930	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67089400-67102000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr2:67089600-67091200	Enhancers	NHEK	skin
3	chr2:67089600-67098000	Enhancers	NHLF	lung
4	chr2:67089600-67102400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:67089800-67091200	Enhancers	Rectal Smooth Muscle	rectum
6	chr2:67089800-67091200	Enhancers	HSMM	muscle
7	chr2:67089800-67091200	Enhancers	HSMMtube	muscle
8	chr2:67089800-67094800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr2:67090000-67091800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
10	chr2:67090600-67091200	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr2:67090600-67091200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:67090600-67091200	Enhancers	Ovary	ovary
13	chr2:67090600-67091400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr2:67090600-67093600	Weak transcription	Fetal Lung	lung
15	chr2:67090600-67094000	Weak transcription	Osteobl	bone
16	chr2:67090600-67098000	Enhancers	NHDF-Ad	bronchial
17	chr2:67090800-67091200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr2:67090800-67091400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr2:67090800-67094000	Weak transcription	Fetal Kidney	kidney
20	chr2:67091000-67093600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr2:67091000-67093600	Weak transcription	Colon Smooth Muscle	Colon
22	chr2:67091000-67093600	Weak transcription	Fetal Stomach	stomach
23	chr2:67091000-67093600	Weak transcription	NH-A	brain
24	chr2:67091000-67094000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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