Variant report

Variant	rs17032630
Chromosome Location	chr2:67072569-67072570
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11892702	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs17032622	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17032637	0.83[AFR][1000 genomes]
rs17032645	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17032655	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73935992	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73937609	1.00[AMR][1000 genomes]
rs7588930	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67061400-67072800	Weak transcription	Pancreas	Pancrea
2	chr2:67068400-67073600	Weak transcription	Fetal Kidney	kidney
3	chr2:67068400-67080200	Weak transcription	Ovary	ovary
4	chr2:67068600-67072600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr2:67068600-67072600	Weak transcription	HSMM	muscle
6	chr2:67068600-67077800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr2:67069000-67081400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr2:67070200-67073000	Enhancers	Fetal Lung	lung
9	chr2:67071800-67072800	Weak transcription	Fetal Stomach	stomach
10	chr2:67072200-67072600	Enhancers	Muscle Satellite Cultured Cells	--
11	chr2:67072200-67072800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr2:67072200-67073200	Enhancers	NHDF-Ad	bronchial
13	chr2:67072400-67072800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr2:67072400-67072800	Enhancers	NHLF	lung
15	chr2:67072400-67073000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr2:67072400-67073000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr2:67072400-67073000	Enhancers	Aorta	Aorta
18	chr2:67072400-67077000	Weak transcription	H9 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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