Variant report

Variant	rs17032637
Chromosome Location	chr2:67080778-67080779
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10519071	1.00[MEX][hapmap];0.92[TSI][hapmap]
rs11892702	0.81[AFR][1000 genomes]
rs17032630	0.83[AFR][1000 genomes]
rs17032645	0.94[AFR][1000 genomes]
rs17032655	0.92[AFR][1000 genomes]
rs73935992	0.83[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1009027	chr2:66947462-67114455	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv874246	chr2:67001969-67147854	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17032637	CNRIP1	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:67069000-67081400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr2:67076200-67081800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr2:67076200-67082400	Enhancers	Colon Smooth Muscle	Colon
4	chr2:67076200-67082400	Enhancers	NHLF	lung
5	chr2:67077200-67080800	Enhancers	Rectal Smooth Muscle	rectum
6	chr2:67078400-67081200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr2:67079200-67080800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr2:67079200-67080800	Weak transcription	Osteobl	bone
9	chr2:67079200-67081000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr2:67079800-67080800	Enhancers	Fetal Lung	lung
11	chr2:67080000-67081000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr2:67080000-67081200	Enhancers	HSMM	muscle
13	chr2:67080000-67081400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr2:67080000-67082400	Enhancers	Fetal Stomach	stomach
15	chr2:67080200-67081200	Active TSS	Fetal Brain Male	brain
16	chr2:67080200-67081400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr2:67080200-67081400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr2:67080200-67082400	Enhancers	Ovary	ovary
19	chr2:67080200-67082400	Enhancers	NH-A	brain
20	chr2:67080400-67082000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr2:67080600-67081000	Weak transcription	Fetal Kidney	kidney
22	chr2:67080600-67081600	Enhancers	Fetal Intestine Small	intestine
23	chr2:67080600-67081600	Enhancers	Fetal Muscle Leg	muscle
24	chr2:67080600-67082200	Enhancers	HSMMtube	muscle
25	chr2:67080600-67082200	Enhancers	NHDF-Ad	bronchial
26	chr2:67080600-67082400	Enhancers	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links