Variant report

Variant	rs72907245
Chromosome Location	chr3:85476559-85476560
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs11918831	0.90[AFR][1000 genomes]
rs11929389	0.88[AFR][1000 genomes]
rs17022773	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs28568871	0.90[AFR][1000 genomes]
rs56825201	0.90[AFR][1000 genomes]
rs57611991	0.85[AFR][1000 genomes]
rs58154502	0.90[AFR][1000 genomes]
rs58690958	0.90[AFR][1000 genomes]
rs59142599	0.90[AFR][1000 genomes]
rs60195286	0.88[AFR][1000 genomes]
rs72903287	0.83[AFR][1000 genomes]
rs72905414	0.90[AFR][1000 genomes]
rs72905427	0.88[AFR][1000 genomes]
rs72905447	0.83[AFR][1000 genomes]
rs72905453	0.83[AFR][1000 genomes]
rs72905457	0.87[AFR][1000 genomes]
rs72905465	0.87[AFR][1000 genomes]
rs72905473	0.88[AFR][1000 genomes]
rs72905474	0.87[AFR][1000 genomes]
rs72905475	0.92[AFR][1000 genomes]
rs72905480	0.92[AFR][1000 genomes]
rs72905486	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905492	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905493	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72907239	1.00[AMR][1000 genomes]
rs7613186	0.87[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1004254	chr3:85394816-85514910	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536621	chr3:85394816-85514910	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv590904	chr3:85438564-85551403	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv998829	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv536622	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv526621	chr3:85470642-85667683	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1009512	chr3:85472690-85533487	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv536623	chr3:85472690-85533487	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv967225	chr3:85474262-85482151	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv3329519	chr3:85476487-85479035	Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85476400-85477000	Enhancers	Muscle Satellite Cultured Cells	--

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