Variant report

Variant	rs59142599
Chromosome Location	chr3:85511558-85511559
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:85510932..85513927-chr3:85533761..85535530,2	K562	blood:
2	chr3:85509846..85512397-chr3:85550866..85553089,2	K562	blood:
3	chr3:85510863..85513429-chr3:85513950..85516943,2	MCF-7	breast:

Extended variants
information (count: 77 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:59)

rs_ID	r²[population]
rs10511080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11918831	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11922348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11929389	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1449392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022773	0.93[AFR][1000 genomes]
rs17022855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17023026	1.00[AMR][1000 genomes]
rs28568871	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56825201	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57611991	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58154502	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs58690958	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59326245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60012465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60048765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60195286	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60365981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6781652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72903276	1.00[AMR][1000 genomes]
rs72903287	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905414	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905427	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905447	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905453	1.00[AMR][1000 genomes]
rs72905457	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905465	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905468	0.80[AFR][1000 genomes]
rs72905473	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905474	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905475	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72905480	0.91[AFR][1000 genomes]
rs72905486	0.93[AFR][1000 genomes]
rs72905492	0.93[AFR][1000 genomes]
rs72905493	0.93[AFR][1000 genomes]
rs72907245	0.90[AFR][1000 genomes]
rs72909215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909301	1.00[AMR][1000 genomes]
rs72911210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72911212	1.00[AMR][1000 genomes]
rs72911213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72913150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72913155	1.00[EUR][1000 genomes]
rs72913158	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73843636	1.00[EUR][1000 genomes]
rs73843645	1.00[EUR][1000 genomes]
rs7613186	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7626074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7636650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3419993	chr3:85030343-85663403	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
2	esv2753915	chr3:85071410-85624810	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
4	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1004254	chr3:85394816-85514910	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
6	nsv536621	chr3:85394816-85514910	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
7	nsv590904	chr3:85438564-85551403	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv998829	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv536622	chr3:85449960-85641099	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv526621	chr3:85470642-85667683	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1009512	chr3:85472690-85533487	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
13	nsv536623	chr3:85472690-85533487	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv1013601	chr3:85489536-85570465	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
15	nsv536624	chr3:85489536-85570465	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
16	nsv1009927	chr3:85497666-85669155	Weak transcription Enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85507800-85512200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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