Variant report

Variant	rs72913158
Chromosome Location	chr3:85680034-85680035
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10511080	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11922348	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1449392	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022855	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022902	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17022958	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17023026	1.00[AMR][1000 genomes]
rs17023248	1.00[AMR][1000 genomes]
rs56075545	1.00[EUR][1000 genomes]
rs56133427	1.00[EUR][1000 genomes]
rs57799716	1.00[AMR][1000 genomes]
rs59142599	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs59326245	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60012465	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60048765	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60365981	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs61153638	1.00[EUR][1000 genomes]
rs6781652	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6795136	1.00[EUR][1000 genomes]
rs72909215	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909239	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909241	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909262	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909263	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909291	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909292	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909296	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909298	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72909301	1.00[AMR][1000 genomes]
rs72911210	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72911212	1.00[AMR][1000 genomes]
rs72911213	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72913150	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72913155	1.00[EUR][1000 genomes]
rs72913172	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72914819	1.00[AMR][1000 genomes]
rs73843636	1.00[EUR][1000 genomes]
rs73843645	1.00[EUR][1000 genomes]
rs73845614	1.00[EUR][1000 genomes]
rs73845616	1.00[EUR][1000 genomes]
rs73845617	1.00[EUR][1000 genomes]
rs73845618	1.00[EUR][1000 genomes]
rs73845628	1.00[EUR][1000 genomes]
rs73845630	1.00[EUR][1000 genomes]
rs73845633	1.00[EUR][1000 genomes]
rs73845641	1.00[EUR][1000 genomes]
rs73845687	1.00[EUR][1000 genomes]
rs7615008	1.00[AMR][1000 genomes]
rs7626074	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7636650	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7638487	1.00[AMR][1000 genomes]
rs7646697	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002238	chr3:85357855-85719373	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536619	chr3:85357855-85719373	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA	1 gene(s)	inside rSNPs	diseases
3	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1006360	chr3:85597755-85683081	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
7	nsv536629	chr3:85597755-85683081	Active TSS Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv590907	chr3:85619451-85694987	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv877101	chr3:85619451-85710336	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv877102	chr3:85639455-85690143	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv877103	chr3:85639455-85702868	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv877104	chr3:85646426-85737646	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv590908	chr3:85653433-85687552	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
14	nsv460750	chr3:85653433-85690143	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
15	nsv590909	chr3:85653433-85690143	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv460752	chr3:85653433-85694987	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv590910	chr3:85653433-85694987	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
18	nsv877105	chr3:85653433-85697614	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85677800-85680400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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