Variant report

Variant	rs57799716
Chromosome Location	chr3:85785442-85785443
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10511080	1.00[AMR][1000 genomes]
rs17022958	1.00[AMR][1000 genomes]
rs17023026	1.00[AMR][1000 genomes]
rs17023248	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56787903	0.84[AFR][1000 genomes]
rs59326245	1.00[AMR][1000 genomes]
rs60012465	1.00[AMR][1000 genomes]
rs60048765	1.00[AMR][1000 genomes]
rs60365981	1.00[AMR][1000 genomes]
rs72908511	0.83[AFR][1000 genomes]
rs72909262	1.00[AMR][1000 genomes]
rs72909263	1.00[AMR][1000 genomes]
rs72909291	1.00[AMR][1000 genomes]
rs72909292	1.00[AMR][1000 genomes]
rs72909296	1.00[AMR][1000 genomes]
rs72909298	1.00[AMR][1000 genomes]
rs72909301	1.00[AMR][1000 genomes]
rs72911210	1.00[AMR][1000 genomes]
rs72911212	1.00[AMR][1000 genomes]
rs72911213	1.00[AMR][1000 genomes]
rs72913150	1.00[AMR][1000 genomes]
rs72913158	1.00[AMR][1000 genomes]
rs72914819	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914849	0.87[AFR][1000 genomes]
rs7615008	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638487	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7646697	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85784800-85793800	Weak transcription	Psoas Muscle	Psoas

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links