Variant report
| Variant | rs7615008 |
|---|---|
| Chromosome Location | chr3:85730335-85730336 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:37)
| rs_ID | r2[population] |
|---|---|
| rs10511070 | 0.94[YRI][hapmap] |
| rs10511080 | 1.00[AMR][1000 genomes] |
| rs11919075 | 0.94[YRI][hapmap] |
| rs11922348 | 1.00[AMR][1000 genomes] |
| rs11924201 | 0.94[YRI][hapmap] |
| rs1449392 | 1.00[AMR][1000 genomes] |
| rs17022902 | 1.00[AMR][1000 genomes] |
| rs17022958 | 1.00[AMR][1000 genomes] |
| rs17023026 | 1.00[AMR][1000 genomes] |
| rs17023248 | 1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs57799716 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs59326245 | 1.00[AMR][1000 genomes] |
| rs60012465 | 1.00[AMR][1000 genomes] |
| rs60048765 | 1.00[AMR][1000 genomes] |
| rs60365981 | 1.00[AMR][1000 genomes] |
| rs6781652 | 1.00[AMR][1000 genomes] |
| rs72909239 | 1.00[AMR][1000 genomes] |
| rs72909241 | 1.00[AMR][1000 genomes] |
| rs72909262 | 1.00[AMR][1000 genomes] |
| rs72909263 | 1.00[AMR][1000 genomes] |
| rs72909291 | 1.00[AMR][1000 genomes] |
| rs72909292 | 1.00[AMR][1000 genomes] |
| rs72909296 | 1.00[AMR][1000 genomes] |
| rs72909298 | 1.00[AMR][1000 genomes] |
| rs72909301 | 1.00[AMR][1000 genomes] |
| rs72911210 | 1.00[AMR][1000 genomes] |
| rs72911212 | 1.00[AMR][1000 genomes] |
| rs72911213 | 1.00[AMR][1000 genomes] |
| rs72913150 | 1.00[AMR][1000 genomes] |
| rs72913158 | 1.00[AMR][1000 genomes] |
| rs72914819 | 0.81[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7626074 | 1.00[AMR][1000 genomes] |
| rs7636650 | 1.00[AMR][1000 genomes] |
| rs7638487 | 1.00[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs7640821 | 0.83[YRI][hapmap] |
| rs7646697 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs9863493 | 0.88[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv590905 | chr3:85438564-85797093 | Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv1010541 | chr3:85505839-85870597 | Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv536625 | chr3:85505839-85870597 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv877104 | chr3:85646426-85737646 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS | Chromatin interactive region | n/a | inside rSNPs | diseases |
| 5 | nsv1005102 | chr3:85729640-85829412 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:85720200-85730400 | Weak transcription | Brain Hippocampus Middle | brain |
| 2 | chr3:85725200-85730400 | Weak transcription | Cortex derived primary cultured neurospheres | brain |
| 3 | chr3:85730200-85731400 | Enhancers | Brain Anterior Caudate | brain |
