Variant report

Variant	rs7640821
Chromosome Location	chr3:85880131-85880132
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs10511069	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs10511070	1.00[LWK][hapmap];0.83[MKK][hapmap];0.89[YRI][hapmap]
rs11914610	0.81[YRI][hapmap]
rs11919075	0.89[YRI][hapmap]
rs11919633	0.94[YRI][hapmap]
rs11919968	1.00[AMR][1000 genomes]
rs11920214	0.85[YRI][hapmap]
rs11924201	0.89[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs13320595	1.00[AMR][1000 genomes]
rs13325188	1.00[AMR][1000 genomes]
rs13353520	1.00[AMR][1000 genomes]
rs17023248	0.83[YRI][hapmap]
rs17023257	1.00[LWK][hapmap];0.82[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs17023295	0.82[ASW][hapmap];1.00[LWK][hapmap];0.81[YRI][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17023810	1.00[AMR][1000 genomes]
rs28611113	1.00[AMR][1000 genomes]
rs4473548	1.00[AMR][1000 genomes]
rs56787903	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs57661808	1.00[AMR][1000 genomes]
rs58770804	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59605482	1.00[AMR][1000 genomes]
rs6549066	1.00[AMR][1000 genomes]
rs6762825	1.00[AMR][1000 genomes]
rs6764756	1.00[AMR][1000 genomes]
rs72906501	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908509	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908511	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908512	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908516	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908517	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908522	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72908582	1.00[AMR][1000 genomes]
rs72908587	1.00[AMR][1000 genomes]
rs72908602	1.00[AMR][1000 genomes]
rs72910511	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72910559	1.00[AMR][1000 genomes]
rs72912429	1.00[AMR][1000 genomes]
rs72912437	1.00[AMR][1000 genomes]
rs72914830	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914833	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914835	1.00[AMR][1000 genomes]
rs72914844	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914849	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7615008	0.83[YRI][hapmap]
rs7638487	0.81[YRI][hapmap]
rs7646697	0.83[YRI][hapmap]
rs7649694	1.00[AMR][1000 genomes]
rs7650035	1.00[AMR][1000 genomes]
rs9856802	1.00[AMR][1000 genomes]
rs9872154	1.00[AMR][1000 genomes]
rs9874223	1.00[AMR][1000 genomes]
rs9876097	1.00[AMR][1000 genomes]
rs9880094	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	esv10799	chr3:85878639-85884972	Enhancers Weak transcription	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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