Variant report

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10511070	0.94[YRI][hapmap]
rs10511080	1.00[AMR][1000 genomes]
rs11919075	0.94[YRI][hapmap]
rs11919633	0.81[YRI][hapmap]
rs11924201	0.94[YRI][hapmap]
rs17022958	1.00[AMR][1000 genomes]
rs17023026	1.00[AMR][1000 genomes]
rs56787903	0.84[AFR][1000 genomes]
rs57799716	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59326245	1.00[AMR][1000 genomes]
rs60012465	1.00[AMR][1000 genomes]
rs60048765	1.00[AMR][1000 genomes]
rs60365981	1.00[AMR][1000 genomes]
rs72908511	0.83[AFR][1000 genomes]
rs72909263	1.00[AMR][1000 genomes]
rs72909291	1.00[AMR][1000 genomes]
rs72909292	1.00[AMR][1000 genomes]
rs72909296	1.00[AMR][1000 genomes]
rs72909298	1.00[AMR][1000 genomes]
rs72909301	1.00[AMR][1000 genomes]
rs72911210	1.00[AMR][1000 genomes]
rs72911212	1.00[AMR][1000 genomes]
rs72911213	1.00[AMR][1000 genomes]
rs72913150	1.00[AMR][1000 genomes]
rs72913158	1.00[AMR][1000 genomes]
rs72914819	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72914849	0.87[AFR][1000 genomes]
rs7615008	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7638487	0.94[YRI][hapmap];0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7640821	0.83[YRI][hapmap]
rs7646697	1.00[YRI][hapmap];0.88[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9863493	0.88[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
6	nsv460753	chr3:85789007-85820416	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv590911	chr3:85789007-85820416	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85784800-85793800	Weak transcription	Psoas Muscle	Psoas
2	chr3:85790200-85795200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:85791000-85792800	Enhancers	Placenta Amnion	Placenta Amnion
4	chr3:85791200-85791600	Enhancers	Brain Angular Gyrus	brain

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