Variant report
| Variant | rs73845687 |
|---|---|
| Chromosome Location | chr3:85884379-85884380 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr3:85877448..85879251-chr3:85882149..85884941,2 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:30)
| rs_ID | r2[population] |
|---|---|
| rs12629171 | 1.00[EUR][1000 genomes] |
| rs12635434 | 1.00[EUR][1000 genomes] |
| rs55982437 | 1.00[EUR][1000 genomes] |
| rs56069708 | 1.00[EUR][1000 genomes] |
| rs56075545 | 1.00[EUR][1000 genomes] |
| rs56133427 | 1.00[EUR][1000 genomes] |
| rs61153638 | 1.00[EUR][1000 genomes] |
| rs6795136 | 1.00[EUR][1000 genomes] |
| rs6806149 | 1.00[EUR][1000 genomes] |
| rs72913155 | 1.00[EUR][1000 genomes] |
| rs72913158 | 1.00[EUR][1000 genomes] |
| rs72913172 | 1.00[EUR][1000 genomes] |
| rs73843514 | 1.00[EUR][1000 genomes] |
| rs73843563 | 1.00[EUR][1000 genomes] |
| rs73843564 | 1.00[EUR][1000 genomes] |
| rs73843567 | 1.00[EUR][1000 genomes] |
| rs73843570 | 1.00[EUR][1000 genomes] |
| rs73843571 | 1.00[EUR][1000 genomes] |
| rs73843573 | 1.00[EUR][1000 genomes] |
| rs73845614 | 1.00[EUR][1000 genomes] |
| rs73845616 | 1.00[EUR][1000 genomes] |
| rs73845617 | 1.00[EUR][1000 genomes] |
| rs73845618 | 1.00[EUR][1000 genomes] |
| rs73845628 | 1.00[EUR][1000 genomes] |
| rs73845630 | 1.00[EUR][1000 genomes] |
| rs73845633 | 1.00[EUR][1000 genomes] |
| rs73845641 | 1.00[EUR][1000 genomes] |
| rs73847404 | 0.80[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs7617889 | 1.00[EUR][1000 genomes] |
| rs7629531 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv877106 | chr3:85814620-86006210 | Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv877107 | chr3:85814620-86037162 | Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv877108 | chr3:85870363-86037162 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | n/a |
| 5 | esv10799 | chr3:85878639-85884972 | Enhancers Weak transcription | TF binding regionChromatin interactive region | 1 gene(s) | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:85884200-85884800 | Weak transcription | Brain Hippocampus Middle | brain |
