Variant report

Variant	rs73847404
Chromosome Location	chr3:85900270-85900271
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs12629171	1.00[EUR][1000 genomes]
rs12635434	1.00[EUR][1000 genomes]
rs55982437	1.00[EUR][1000 genomes]
rs56069708	1.00[EUR][1000 genomes]
rs56075545	1.00[EUR][1000 genomes]
rs56133427	1.00[EUR][1000 genomes]
rs61153638	1.00[EUR][1000 genomes]
rs6795136	1.00[EUR][1000 genomes]
rs6806149	1.00[EUR][1000 genomes]
rs72913172	1.00[EUR][1000 genomes]
rs73843514	1.00[EUR][1000 genomes]
rs73843563	1.00[EUR][1000 genomes]
rs73843564	1.00[EUR][1000 genomes]
rs73843567	1.00[EUR][1000 genomes]
rs73843570	1.00[EUR][1000 genomes]
rs73843571	1.00[EUR][1000 genomes]
rs73843573	1.00[EUR][1000 genomes]
rs73845614	1.00[EUR][1000 genomes]
rs73845616	1.00[EUR][1000 genomes]
rs73845617	1.00[EUR][1000 genomes]
rs73845618	1.00[EUR][1000 genomes]
rs73845628	1.00[EUR][1000 genomes]
rs73845630	1.00[EUR][1000 genomes]
rs73845633	1.00[EUR][1000 genomes]
rs73845641	1.00[EUR][1000 genomes]
rs73845687	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7617889	1.00[EUR][1000 genomes]
rs7629531	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
5	nsv877109	chr3:85892098-86006210	Enhancers Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv877110	chr3:85892098-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
7	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85900200-85900600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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