Variant report

Variant	rs73843563
Chromosome Location	chr3:86034742-86034743
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs12629171	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12635434	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs17024802	1.00[AMR][1000 genomes]
rs55982437	1.00[EUR][1000 genomes]
rs56069708	1.00[EUR][1000 genomes]
rs56075545	1.00[EUR][1000 genomes]
rs56161483	1.00[EUR][1000 genomes]
rs56670526	1.00[EUR][1000 genomes]
rs57014811	1.00[EUR][1000 genomes]
rs57553223	1.00[EUR][1000 genomes]
rs57836669	1.00[EUR][1000 genomes]
rs60300179	1.00[EUR][1000 genomes]
rs6787552	1.00[EUR][1000 genomes]
rs6806149	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72914424	1.00[EUR][1000 genomes]
rs72916530	1.00[EUR][1000 genomes]
rs72916536	1.00[EUR][1000 genomes]
rs72916558	1.00[EUR][1000 genomes]
rs73843514	1.00[EUR][1000 genomes]
rs73843564	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843567	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843570	1.00[EUR][1000 genomes]
rs73843571	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843573	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845687	1.00[EUR][1000 genomes]
rs73845724	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845771	1.00[EUR][1000 genomes]
rs73845778	1.00[EUR][1000 genomes]
rs73847404	1.00[EUR][1000 genomes]
rs7617889	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7629531	0.90[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv877108	chr3:85870363-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
4	nsv877110	chr3:85892098-86037162	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region	n/a	inside rSNPs	n/a
5	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
8	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86028000-86043000	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links