Variant report

Variant	rs73843567
Chromosome Location	chr3:86040968-86040969
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12629171	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12635434	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55982437	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56069708	1.00[EUR][1000 genomes]
rs56075545	1.00[EUR][1000 genomes]
rs56161483	1.00[EUR][1000 genomes]
rs56294119	1.00[EUR][1000 genomes]
rs56670526	1.00[EUR][1000 genomes]
rs57014811	1.00[EUR][1000 genomes]
rs57553223	1.00[EUR][1000 genomes]
rs57836669	1.00[EUR][1000 genomes]
rs60300179	1.00[EUR][1000 genomes]
rs6787552	1.00[EUR][1000 genomes]
rs6806149	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72914424	1.00[EUR][1000 genomes]
rs72916530	1.00[EUR][1000 genomes]
rs72916536	1.00[EUR][1000 genomes]
rs72916558	1.00[EUR][1000 genomes]
rs72916580	1.00[EUR][1000 genomes]
rs72916583	1.00[EUR][1000 genomes]
rs73843514	1.00[EUR][1000 genomes]
rs73843563	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843564	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843570	1.00[EUR][1000 genomes]
rs73843571	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843573	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845687	1.00[EUR][1000 genomes]
rs73845724	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845771	1.00[EUR][1000 genomes]
rs73845778	1.00[EUR][1000 genomes]
rs73847404	1.00[EUR][1000 genomes]
rs7617889	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7629531	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877111	chr3:85892098-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	nsv470727	chr3:85917289-86044224	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	nsv590913	chr3:85917289-86044224	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	nsv877112	chr3:85964737-86083716	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86028000-86043000	Weak transcription	Brain Inferior Temporal Lobe	brain
2	chr3:86040400-86064000	Weak transcription	Brain Hippocampus Middle	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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