Variant report

Variant	rs56075545
Chromosome Location	chr3:85832119-85832120
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs56069708	1.00[EUR][1000 genomes]
rs56133427	1.00[EUR][1000 genomes]
rs59326245	1.00[EUR][1000 genomes]
rs60048765	1.00[EUR][1000 genomes]
rs61153638	1.00[EUR][1000 genomes]
rs6795136	1.00[EUR][1000 genomes]
rs72909291	1.00[EUR][1000 genomes]
rs72909292	1.00[EUR][1000 genomes]
rs72909296	1.00[EUR][1000 genomes]
rs72909298	1.00[EUR][1000 genomes]
rs72911210	1.00[EUR][1000 genomes]
rs72911213	1.00[EUR][1000 genomes]
rs72913150	1.00[EUR][1000 genomes]
rs72913155	1.00[EUR][1000 genomes]
rs72913158	1.00[EUR][1000 genomes]
rs72913172	1.00[EUR][1000 genomes]
rs73843514	1.00[EUR][1000 genomes]
rs73843563	1.00[EUR][1000 genomes]
rs73843564	1.00[EUR][1000 genomes]
rs73843567	1.00[EUR][1000 genomes]
rs73845614	1.00[EUR][1000 genomes]
rs73845616	1.00[EUR][1000 genomes]
rs73845617	1.00[EUR][1000 genomes]
rs73845618	1.00[EUR][1000 genomes]
rs73845628	1.00[EUR][1000 genomes]
rs73845630	1.00[EUR][1000 genomes]
rs73845633	1.00[EUR][1000 genomes]
rs73845641	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845687	1.00[EUR][1000 genomes]
rs73847404	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
4	nsv877106	chr3:85814620-86006210	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv877107	chr3:85814620-86037162	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85830000-85832800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr3:85830200-85832600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr3:85830200-85832800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr3:85830400-85832200	Enhancers	Fetal Lung	lung
5	chr3:85831400-85832400	Weak transcription	Colon Smooth Muscle	Colon
6	chr3:85831600-85832800	Enhancers	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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