Variant report

Variant	rs73845641
Chromosome Location	chr3:85807038-85807039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs10511080	1.00[EUR][1000 genomes]
rs56069708	1.00[EUR][1000 genomes]
rs56075545	0.92[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56133427	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs59326245	1.00[EUR][1000 genomes]
rs60048765	1.00[EUR][1000 genomes]
rs60365981	1.00[EUR][1000 genomes]
rs61153638	1.00[EUR][1000 genomes]
rs6795136	1.00[EUR][1000 genomes]
rs72909291	1.00[EUR][1000 genomes]
rs72909292	1.00[EUR][1000 genomes]
rs72909296	1.00[EUR][1000 genomes]
rs72909298	1.00[EUR][1000 genomes]
rs72911210	1.00[EUR][1000 genomes]
rs72911213	1.00[EUR][1000 genomes]
rs72913150	1.00[EUR][1000 genomes]
rs72913155	1.00[EUR][1000 genomes]
rs72913158	1.00[EUR][1000 genomes]
rs72913172	1.00[EUR][1000 genomes]
rs73843514	1.00[EUR][1000 genomes]
rs73845614	1.00[EUR][1000 genomes]
rs73845616	1.00[EUR][1000 genomes]
rs73845617	1.00[EUR][1000 genomes]
rs73845618	1.00[EUR][1000 genomes]
rs73845628	1.00[EUR][1000 genomes]
rs73845630	1.00[EUR][1000 genomes]
rs73845633	1.00[EUR][1000 genomes]
rs73845687	1.00[EUR][1000 genomes]
rs73847404	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
5	nsv460753	chr3:85789007-85820416	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	n/a
6	nsv590911	chr3:85789007-85820416	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85801200-85815000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:85805000-85810000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links