Variant report

Variant	rs56133427
Chromosome Location	chr3:85771156-85771157
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10511080	1.00[EUR][1000 genomes]
rs17022958	1.00[EUR][1000 genomes]
rs56075545	1.00[EUR][1000 genomes]
rs59326245	1.00[EUR][1000 genomes]
rs60012465	1.00[EUR][1000 genomes]
rs60048765	1.00[EUR][1000 genomes]
rs60365981	1.00[EUR][1000 genomes]
rs61153638	1.00[EUR][1000 genomes]
rs6795136	1.00[EUR][1000 genomes]
rs72909262	1.00[EUR][1000 genomes]
rs72909263	1.00[EUR][1000 genomes]
rs72909291	1.00[EUR][1000 genomes]
rs72909292	1.00[EUR][1000 genomes]
rs72909296	1.00[EUR][1000 genomes]
rs72909298	1.00[EUR][1000 genomes]
rs72911210	1.00[EUR][1000 genomes]
rs72911213	1.00[EUR][1000 genomes]
rs72913150	1.00[EUR][1000 genomes]
rs72913155	1.00[EUR][1000 genomes]
rs72913158	1.00[EUR][1000 genomes]
rs72913172	1.00[EUR][1000 genomes]
rs73843514	1.00[EUR][1000 genomes]
rs73843645	1.00[EUR][1000 genomes]
rs73845614	1.00[EUR][1000 genomes]
rs73845616	1.00[EUR][1000 genomes]
rs73845617	1.00[EUR][1000 genomes]
rs73845618	1.00[EUR][1000 genomes]
rs73845628	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845630	0.85[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845633	1.00[EUR][1000 genomes]
rs73845641	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845687	1.00[EUR][1000 genomes]
rs73847404	1.00[EUR][1000 genomes]
rs7626074	1.00[EUR][1000 genomes]
rs7636650	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1005102	chr3:85729640-85829412	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85770400-85771400	Enhancers	HMEC	breast
2	chr3:85770600-85771200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr3:85770600-85771400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:85770600-85771800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
5	chr3:85770800-85771400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr3:85771000-85771400	ZNF genes & repeats	Brain Angular Gyrus	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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