Variant report

Variant	rs73845617
Chromosome Location	chr3:85728050-85728051
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10511080	1.00[EUR][1000 genomes]
rs11922348	1.00[EUR][1000 genomes]
rs1449392	1.00[EUR][1000 genomes]
rs17022902	1.00[EUR][1000 genomes]
rs17022958	1.00[EUR][1000 genomes]
rs56075545	1.00[EUR][1000 genomes]
rs56133427	1.00[EUR][1000 genomes]
rs59326245	1.00[EUR][1000 genomes]
rs60012465	1.00[EUR][1000 genomes]
rs60048765	1.00[EUR][1000 genomes]
rs60365981	1.00[EUR][1000 genomes]
rs61153638	1.00[EUR][1000 genomes]
rs6781652	1.00[EUR][1000 genomes]
rs6795136	1.00[EUR][1000 genomes]
rs72909239	1.00[EUR][1000 genomes]
rs72909241	1.00[EUR][1000 genomes]
rs72909262	1.00[EUR][1000 genomes]
rs72909263	1.00[EUR][1000 genomes]
rs72909291	1.00[EUR][1000 genomes]
rs72909292	1.00[EUR][1000 genomes]
rs72909296	1.00[EUR][1000 genomes]
rs72909298	1.00[EUR][1000 genomes]
rs72911210	1.00[EUR][1000 genomes]
rs72911213	1.00[EUR][1000 genomes]
rs72913150	1.00[EUR][1000 genomes]
rs72913155	1.00[EUR][1000 genomes]
rs72913158	1.00[EUR][1000 genomes]
rs72913172	1.00[EUR][1000 genomes]
rs73843636	1.00[EUR][1000 genomes]
rs73843645	1.00[EUR][1000 genomes]
rs73845614	1.00[EUR][1000 genomes]
rs73845616	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845618	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845628	1.00[EUR][1000 genomes]
rs73845630	1.00[EUR][1000 genomes]
rs73845633	1.00[EUR][1000 genomes]
rs73845641	1.00[EUR][1000 genomes]
rs73845687	1.00[EUR][1000 genomes]
rs73847404	1.00[EUR][1000 genomes]
rs7626074	1.00[EUR][1000 genomes]
rs7636650	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv590905	chr3:85438564-85797093	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv1010541	chr3:85505839-85870597	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv536625	chr3:85505839-85870597	Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv877104	chr3:85646426-85737646	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:85720200-85730400	Weak transcription	Brain Hippocampus Middle	brain
2	chr3:85725200-85730400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:85727200-85728600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:85727400-85729000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
5	chr3:85727600-85729000	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:85728000-85728600	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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