Variant report

Variant	rs73845724
Chromosome Location	chr3:86116056-86116057
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs12629171	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12635434	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs55982437	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56069708	1.00[EUR][1000 genomes]
rs56161483	1.00[EUR][1000 genomes]
rs56294119	1.00[EUR][1000 genomes]
rs56670526	1.00[EUR][1000 genomes]
rs57014811	1.00[EUR][1000 genomes]
rs57553223	1.00[EUR][1000 genomes]
rs57836669	1.00[EUR][1000 genomes]
rs60300179	1.00[EUR][1000 genomes]
rs6773643	1.00[EUR][1000 genomes]
rs6779407	1.00[EUR][1000 genomes]
rs6787552	1.00[EUR][1000 genomes]
rs6806149	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72914424	1.00[EUR][1000 genomes]
rs72916530	1.00[EUR][1000 genomes]
rs72916536	1.00[EUR][1000 genomes]
rs72916558	1.00[EUR][1000 genomes]
rs72916580	1.00[EUR][1000 genomes]
rs72916583	1.00[EUR][1000 genomes]
rs72918524	1.00[EUR][1000 genomes]
rs72918529	1.00[EUR][1000 genomes]
rs73843514	1.00[EUR][1000 genomes]
rs73843563	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843564	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843567	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843570	1.00[EUR][1000 genomes]
rs73843571	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843573	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845771	1.00[EUR][1000 genomes]
rs73845778	1.00[EUR][1000 genomes]
rs7617889	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7629531	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86111000-86119600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr3:86115000-86117200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr3:86115800-86118600	Weak transcription	Brain Cingulate Gyrus	brain
4	chr3:86116000-86116200	Enhancers	Brain Inferior Temporal Lobe	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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