Variant report
| Variant | rs6779407 |
|---|---|
| Chromosome Location | chr3:86256201-86256202 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs55982437 | 1.00[EUR][1000 genomes] |
| rs56161483 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs56294119 | 1.00[EUR][1000 genomes] |
| rs56670526 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57014811 | 1.00[EUR][1000 genomes] |
| rs57553223 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs57836669 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs60300179 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6773643 | 0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs6787552 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72914424 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72916530 | 1.00[EUR][1000 genomes] |
| rs72916536 | 1.00[EUR][1000 genomes] |
| rs72916558 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72916580 | 1.00[EUR][1000 genomes] |
| rs72916583 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72918524 | 0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72918529 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs72920614 | 1.00[AMR][1000 genomes] |
| rs73845724 | 1.00[EUR][1000 genomes] |
| rs73845771 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs73845778 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv532629 | chr3:85763873-86608579 | Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 14 gene(s) | inside rSNPs | diseases |
| 2 | nsv877113 | chr3:86205676-86298087 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr3:86252600-86257200 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
