Variant report

Variant	rs72920614
Chromosome Location	chr3:86320258-86320259
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs56161483	1.00[AMR][1000 genomes]
rs56670526	1.00[AMR][1000 genomes]
rs57553223	1.00[AMR][1000 genomes]
rs57836669	1.00[AMR][1000 genomes]
rs60300179	1.00[AMR][1000 genomes]
rs6773643	1.00[AMR][1000 genomes]
rs6779407	1.00[AMR][1000 genomes]
rs6787552	1.00[AMR][1000 genomes]
rs72914424	1.00[AMR][1000 genomes]
rs72916558	1.00[AMR][1000 genomes]
rs72916583	1.00[AMR][1000 genomes]
rs72918524	1.00[AMR][1000 genomes]
rs72918529	1.00[AMR][1000 genomes]
rs73845771	1.00[AMR][1000 genomes]
rs73845778	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877114	chr3:86257272-86328961	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv877115	chr3:86278951-86554319	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86318800-86320800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr3:86319000-86320600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:86319400-86320400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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