Variant report

Variant	rs56161483
Chromosome Location	chr3:86223743-86223744
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs12629171	1.00[EUR][1000 genomes]
rs12635434	1.00[EUR][1000 genomes]
rs55982437	1.00[EUR][1000 genomes]
rs56294119	1.00[EUR][1000 genomes]
rs56670526	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57014811	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57553223	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57836669	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs60300179	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6773643	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6779407	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6787552	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6806149	1.00[EUR][1000 genomes]
rs72914424	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916530	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72916536	0.97[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72916558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916580	1.00[EUR][1000 genomes]
rs72916583	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72918524	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72918529	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72920614	1.00[AMR][1000 genomes]
rs73843563	1.00[EUR][1000 genomes]
rs73843564	1.00[EUR][1000 genomes]
rs73843567	1.00[EUR][1000 genomes]
rs73843570	1.00[EUR][1000 genomes]
rs73843571	1.00[EUR][1000 genomes]
rs73843573	1.00[EUR][1000 genomes]
rs73845724	1.00[EUR][1000 genomes]
rs73845771	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73845778	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7617889	1.00[EUR][1000 genomes]
rs7629531	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86220000-86224000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:86222600-86223800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
3	chr3:86222600-86224200	Enhancers	iPS-20b Cell Line	embryonic stem cell
4	chr3:86222600-86224600	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr3:86222600-86224600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr3:86222600-86225200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr3:86222600-86225600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr3:86222600-86226000	Enhancers	H1 Cell Line	embryonic stem cell
9	chr3:86222600-86226000	Enhancers	H9 Cell Line	embryonic stem cell
10	chr3:86222600-86226000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr3:86222600-86226400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr3:86223200-86224200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr3:86223200-86224200	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:86223200-86226200	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr3:86223400-86226400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr3:86223600-86226200	Enhancers	ES-I3 Cell Line	embryonic stem cell

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