Variant report

Variant	rs55982437
Chromosome Location	chr3:86089123-86089124
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs12629171	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12633845	0.95[ASN][1000 genomes]
rs12635434	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56069708	1.00[EUR][1000 genomes]
rs56161483	1.00[EUR][1000 genomes]
rs56294119	1.00[EUR][1000 genomes]
rs56670526	1.00[EUR][1000 genomes]
rs57014811	1.00[EUR][1000 genomes]
rs57553223	1.00[EUR][1000 genomes]
rs57836669	1.00[EUR][1000 genomes]
rs60300179	1.00[EUR][1000 genomes]
rs67344309	0.95[ASN][1000 genomes]
rs6773643	1.00[EUR][1000 genomes]
rs6779407	1.00[EUR][1000 genomes]
rs6787552	1.00[EUR][1000 genomes]
rs6806149	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72914424	1.00[EUR][1000 genomes]
rs72916530	1.00[EUR][1000 genomes]
rs72916536	1.00[EUR][1000 genomes]
rs72916558	1.00[EUR][1000 genomes]
rs72916580	1.00[EUR][1000 genomes]
rs72916583	1.00[EUR][1000 genomes]
rs72918524	1.00[EUR][1000 genomes]
rs72918529	1.00[EUR][1000 genomes]
rs73843514	1.00[EUR][1000 genomes]
rs73843563	1.00[EUR][1000 genomes]
rs73843564	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843567	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73843570	1.00[EUR][1000 genomes]
rs73843571	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73843573	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73845687	1.00[EUR][1000 genomes]
rs73845724	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73845770	0.85[ASN][1000 genomes]
rs73845771	1.00[EUR][1000 genomes]
rs73845778	1.00[EUR][1000 genomes]
rs73847404	1.00[EUR][1000 genomes]
rs7617889	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7629531	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86088400-86089200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell

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