Variant report

Variant	rs57014811
Chromosome Location	chr3:86224278-86224279
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr21:19140307..19141117-chr3:86224171..86225016,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs12629171	1.00[EUR][1000 genomes]
rs12635434	1.00[EUR][1000 genomes]
rs55982437	1.00[EUR][1000 genomes]
rs56161483	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs56294119	1.00[EUR][1000 genomes]
rs56670526	1.00[EUR][1000 genomes]
rs57553223	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57836669	1.00[EUR][1000 genomes]
rs60300179	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6773643	1.00[EUR][1000 genomes]
rs6779407	1.00[EUR][1000 genomes]
rs6787552	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs6806149	1.00[EUR][1000 genomes]
rs72914424	1.00[EUR][1000 genomes]
rs72916530	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916536	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72916558	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72916580	1.00[EUR][1000 genomes]
rs72916583	0.93[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs72918524	1.00[EUR][1000 genomes]
rs72918529	1.00[EUR][1000 genomes]
rs73843563	1.00[EUR][1000 genomes]
rs73843564	1.00[EUR][1000 genomes]
rs73843567	1.00[EUR][1000 genomes]
rs73843570	1.00[EUR][1000 genomes]
rs73843571	1.00[EUR][1000 genomes]
rs73843573	1.00[EUR][1000 genomes]
rs73845724	1.00[EUR][1000 genomes]
rs73845771	1.00[EUR][1000 genomes]
rs73845778	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs7617889	1.00[EUR][1000 genomes]
rs7629531	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532629	chr3:85763873-86608579	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv877113	chr3:86205676-86298087	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:86222600-86224600	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr3:86222600-86224600	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr3:86222600-86225200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr3:86222600-86225600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr3:86222600-86226000	Enhancers	H1 Cell Line	embryonic stem cell
6	chr3:86222600-86226000	Enhancers	H9 Cell Line	embryonic stem cell
7	chr3:86222600-86226000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr3:86222600-86226400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr3:86223200-86226200	Enhancers	iPS-15b Cell Line	embryonic stem cell
10	chr3:86223400-86226400	Enhancers	HUES64 Cell Line	embryonic stem cell
11	chr3:86223600-86226200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr3:86223800-86225000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr3:86224000-86224400	Enhancers	Sigmoid Colon	Sigmoid Colon
14	chr3:86224000-86225400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr3:86224000-86225400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr3:86224200-86224400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
17	chr3:86224200-86224600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr3:86224200-86224600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr3:86224200-86224600	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
20	chr3:86224200-86224600	Enhancers	Colon Smooth Muscle	Colon
21	chr3:86224200-86224600	Enhancers	Rectal Mucosa Donor 29	rectum
22	chr3:86224200-86224600	Enhancers	Rectal Mucosa Donor 31	rectum
23	chr3:86224200-86225200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr3:86224200-86225200	Enhancers	Fetal Stomach	stomach
25	chr3:86224200-86225200	Enhancers	Rectal Smooth Muscle	rectum
26	chr3:86224200-86225400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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